Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g02092 ATGGAGAAGCTAGGGTTAGGGTTTGATTTGGTCCTGAACAATAATCTCATTGATATGTACGCAAAATGTGGCACTATGAAATTGGCATGTTTGGTGTTTGATAAAATGCCACAAAGAAATGTGGTGTCTTGGACGGCTCTGATGTGTGGTTATTTGCAAAATGGTGATCCCAATGCCTCTTTAGTGTTGTTCTCTAAAATGGGGCTATCTAGTATTAAGCCTAATGAGTTCACACTTTCTACTGCTCTAAAAGCTTCAACGGTTTTGGGTGTACCTCAGAATGGAATGCAGATTCATGGGGTTTGTGCAAAATCCAATCTTTATTTTGCCCCTGTCGTGGGAAATTCGATTATTGACATGTATTCCAAGTGCGGACAGGTTGGCGAGGCGGCTAAGATGTTCGATGCTATGCCAGTGAGGAACCTTGTGAGTTGGAATGCAATGATTGCCGGATACACCCATGAGAGAAATGGTGAAGGGGCTTTGAATCTGTTTAGGGAGATGCAAGAAAAGGGAGAAGTTCCTGATGAATATACATATTCAAGTACTTTAAAGGCATGTAGTTGTGTTGGCATGGCTGCCGAAGGATCGCAAATACATGCTGCCTTAATCAGACAAGGATCTTCATACTTGGCTCAATCAACTGTCGCAGGTGCTTTGGTTGATTTTTATGTCAAATGCAGACACATAGCCAAAGCTAGGAAGGTGTTCGATCAAATTGAACATAAGAATGTGGTACCTTGGAGCGCACTTATTCTTGGCTATGCTCAAGAAGACAATTTGCAAGAGTCCATAAACTTGTTTCATCAGTTGAGAGAGAGCAGACATAAGGTGGATGGGTTTGTGCTCTCAAGTCTCATAGGTGTGTTTGCTGATTTCGCCCTTGTGTTGCAGGGGAAGCAAATGCACGCTTACACCATCAAAGTCCCATTCGGATTAGAAGCATCAGTGGCAAATTCAGTTTTAGATATGTACATGAAATGCGGATTAACAGACGAGGCAGATACACTTTTCAGAGAGATGCCAACAAGGAATGTTGTTTCCTGGACGGTTATGATTACTGGTTATGGTAAACATGGTATAGGTTACAAGGCAGTTAAACTTTTCGCCGAAATGCAAGTTCATGGAATCGAACCTGACAGTGTGACATACTTAGCTGTGCTCTCAGCTTGCAGCCATACAGGACTCATCAAAGAAGGACAACAATACTTCTCCAGTTTCCTTAGCAATCCCCATTTCAAACCACAAGTAGAGCATTATGCTTGCATGGTTGATCTCCTTGGACGTGCCGGGCGCTTAAACGACGCGAAGGAGCTCATTGAGACAATGCCCTTGAAGCCAAATACCGGTATATGGCAGACACTGCTTAGTGCTTGTAGAATGCATGGGGAGATGGAGATGGGTGAAAAAGTGGGAGAGATATTATTGAGAATGGATGGTAATAATCCAGTGAACTATGTCATGTTGTCAAACATGTATGCTGATGCAGGATATTGGAATGAAAGCGAGAAGATGAGAGAGAAAGTGAAGAGGAAGGGATTGAAGAAAGAGGCGGGACGAAGTTGGGTAGAAATAAACAAGGAAATCCACATTTTCTTCAATGGAGATAGCACACATACACTCATAGAGAAGATTCATCAAGTGTTGAGAGAAATGGAGAAGAGGATGAAGGAGGAAATAGGGTATGTTCATAATATGAATTTTGCATTGCATGATGTTGAAGAGGAATCAAAGGTGGAGAGTTTGAGGTACCATAGTGAGAAATTGGCTATTGGATTGGTTTTGGTCAGTGGTGGGGTAAAAGGAGAGAGGATGGTTAGGATTTTCAAGAATTTGAGGGTTTGTGGTGACTGCCATACCTTCATCAAGGGTCTCTCTAAGGTTTTGAAGATGGTATTTGTGGTGAGAGATGCAAATAGGTTCCACAGATTTGAGAACGGTCTATGTTCTTGTGGAGATTATTGGTAA 1968 0.4217 MEKLGLGFDLVLNNNLIDMYAKCGTMKLACLVFDKMPQRNVVSWTALMCGYLQNGDPNASLVLFSKMGLSSIKPNEFTLSTALKASTVLGVPQNGMQIHGVCAKSNLYFAPVVGNSIIDMYSKCGQVGEAAKMFDAMPVRNLVSWNAMIAGYTHERNGEGALNLFREMQEKGEVPDEYTYSSTLKACSCVGMAAEGSQIHAALIRQGSSYLAQSTVAGALVDFYVKCRHIAKARKVFDQIEHKNVVPWSALILGYAQEDNLQESINLFHQLRESRHKVDGFVLSSLIGVFADFALVLQGKQMHAYTIKVPFGLEASVANSVLDMYMKCGLTDEADTLFREMPTRNVVSWTVMITGYGKHGIGYKAVKLFAEMQVHGIEPDSVTYLAVLSACSHTGLIKEGQQYFSSFLSNPHFKPQVEHYACMVDLLGRAGRLNDAKELIETMPLKPNTGIWQTLLSACRMHGEMEMGEKVGEILLRMDGNNPVNYVMLSNMYADAGYWNESEKMREKVKRKGLKKEAGRSWVEINKEIHIFFNGDSTHTLIEKIHQVLREMEKRMKEEIGYVHNMNFALHDVEEESKVESLRYHSEKLAIGLVLVSGGVKGERMVRIFKNLRVCGDCHTFIKGLSKVLKMVFVVRDANRFHRFENGLCSCGDYW 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g02092 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Adu10g02092 655 PANTHER - 3 613 - -
Adu10g02092 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Adu10g02092 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Adu10g02092 655 TIGRFAM PPR: pentatricopeptide repeat domain 143 177 IPR002885 -
Adu10g02092 655 TIGRFAM PPR: pentatricopeptide repeat domain 347 381 IPR002885 -
Adu10g02092 655 TIGRFAM PPR: pentatricopeptide repeat domain 115 141 IPR002885 -
Adu10g02092 655 TIGRFAM PPR: pentatricopeptide repeat domain 42 76 IPR002885 -
Adu10g02092 655 TIGRFAM PPR: pentatricopeptide repeat domain 319 347 IPR002885 -
Adu10g02092 655 Pfam PPR repeat 247 274 IPR002885 -
Adu10g02092 655 Pfam PPR repeat 420 443 IPR002885 -
Adu10g02092 655 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 3 613 - -
Adu10g02092 655 Pfam PPR repeat family 344 392 IPR002885 -
Adu10g02092 655 Pfam PPR repeat family 39 85 IPR002885 -
Adu10g02092 655 Pfam PPR repeat family 141 187 IPR002885 -
Adu10g02092 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 40 74 IPR002885 -
Adu10g02092 655 Pfam DYW family of nucleic acid deaminases 561 655 IPR032867 GO:0008270
Adu10g02092 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Adu10g02092 655 Gene3D Tetratricopeptide repeat domain 408 588 IPR011990 GO:0005515
Adu10g02092 655 Gene3D Tetratricopeptide repeat domain 310 402 IPR011990 GO:0005515
Adu10g02092 655 Gene3D Tetratricopeptide repeat domain 202 305 IPR011990 GO:0005515
Adu10g02092 655 Gene3D Tetratricopeptide repeat domain 1 90 IPR011990 GO:0005515
Adu10g02092 655 Gene3D Tetratricopeptide repeat domain 101 201 IPR011990 GO:0005515
Adu10g02092 655 Pfam E motif 462 524 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g02092 Adu-Chr10 92804780 92806771 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g02092 9 655 Glycoside Hydrolase AT3G49170 38.847 2.62e-160 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g02092 - - gmx:100806657 1056.59