Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g01992 ATGACGGGTCCGTTTGGAGTTGGGGTTACAATATTTGTATCCTTAATATGCTGGGAGTCACTTAGTCGAATTCAGTTACGGATATTACTTATTTTTACTTTTGAGAGTTTTGTTTACTTTATATTCATGATTAGTATCTACATCCTTGACTACTGTATGGATGGTCAACTTGGCACGGACGGAGAGGATACACCTGATGAAAATTCTATTGGTGGAGTTTATAACCTAGCGCCCCACTTATTGAATAAGTTTCCCAAGTCGCACCCACTTGATTCTTCAACTGGTGTCTCTGAAGTAGAAGGAAAAGGATCAATTAAGATACATGCTGTCAAAGCAGGAGGAATGATGTCTATGGCTATTGATAATCGTGGCACCCTCTGGATGTGGGGAAACTGCCCACAAGAAAGCAAAGGTGAATTCTCTCTTGTAAGTAGTTTCATTCCAATGCCAATACTGGCCTTTCATGGCCTTAATGTTGCCAAGGTTGCATGTGGAAATGAGCATGTTGTAGCATTGGTTAGTGCCGGAGAATCAAACAATGGTGAAGATTTGGTCTGCTACTCTTGGGGTTTTAACAACCATGGCCAGTTAGGATTGGGGGATAGGGAGAACAGGGCACATCCAGAAGTTGTGAAAACATTTGGTGAGGAGTCCCCTTGGACAATTTATGACATAGCATGTGGTGCTGCTCACACTGCCTTGCTCACTCGCAAAAAGAAATCTACCGAGTTGGAAAGCAAGTGCTGGACTTTTGGCCTTGGGGATAATGGCCAACTCGGGCATGGAACAACACAAAGCGCATTATTTCCTACACCTGTTCAAGACTTGCCGCAAGATATATCTCTTATTGGTATCGATTGCGGCTTGTTTCATACAAGTGTGGTTTCCTCATCAGGGGATGTGTGGTCATGGGGAATGGAGAAGGGTCTTGGCTTATGCCCTGATGCTGGTCGTGGTTCATCAGATTCTGGTGATGCCCTCTCACCCTTGCTTAAACCGTGTGCTCCATACCAACCTAAGTTTCCAGATCCGGTTCAAGTTGCATGTGGAGCTGCACATACTGTTATTGTTGCGCGGGATGGATATAAGGTGTGGTCTTGGGGTAGGGGGCGATGTGGAGTTCTTGGAACTGGTAACGAATTGGATTGTTATACTCCCACCAAGGTGCGGTGGCCTCCAGCGACCGAAGATTCAGAGGAAGAGGAATCAAAGAGCTCCCTCGAGCAGGACAGAGAGAAAGAAAAGGAGGCCGAAGTAAAAACAGAAACAGATGAGAAATTATCCTCGGCACTGAATGAGCTGAAGCAGCTTCAATTGAAGCTATCCACAATGGAACAATATGCTAGCATACTTCATGGTTGTGTTTTCGGAAAACCTTTTGCTGAGCAAGATGTCCCTGCTTCATTGAAGGATTCAGGTTCATTCAACATTGCAAAAGAATGGGAGAACATGTTGGAGACTGCAGATCATAGGACGCTAATGAGGTTGGAAATGTTCTACCGGGACATGCTTGCTGGTGTGAAAGATAAACAAATGAAGAGGAGGATCAAGGAAATTGTAAAGGAGTGCCTCCAATCACCGGAGCGGAAAAATTAG 1596 0.4474 MTGPFGVGVTIFVSLICWESLSRIQLRILLIFTFESFVYFIFMISIYILDYCMDGQLGTDGEDTPDENSIGGVYNLAPHLLNKFPKSHPLDSSTGVSEVEGKGSIKIHAVKAGGMMSMAIDNRGTLWMWGNCPQESKGEFSLVSSFIPMPILAFHGLNVAKVACGNEHVVALVSAGESNNGEDLVCYSWGFNNHGQLGLGDRENRAHPEVVKTFGEESPWTIYDIACGAAHTALLTRKKKSTELESKCWTFGLGDNGQLGHGTTQSALFPTPVQDLPQDISLIGIDCGLFHTSVVSSSGDVWSWGMEKGLGLCPDAGRGSSDSGDALSPLLKPCAPYQPKFPDPVQVACGAAHTVIVARDGYKVWSWGRGRCGVLGTGNELDCYTPTKVRWPPATEDSEEEESKSSLEQDREKEKEAEVKTETDEKLSSALNELKQLQLKLSTMEQYASILHGCVFGKPFAEQDVPASLKDSGSFNIAKEWENMLETADHRTLMRLEMFYRDMLAGVKDKQMKRRIKEIVKECLQSPERKN 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g01992 531 Pfam Regulator of chromosome condensation (RCC1) repeat 248 294 IPR000408 -
Adu10g01992 531 Pfam Regulator of chromosome condensation (RCC1) repeat 187 235 IPR000408 -
Adu10g01992 531 Pfam Regulator of chromosome condensation (RCC1) repeat 364 393 IPR000408 -
Adu10g01992 531 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 61 529 - -
Adu10g01992 531 Coils Coil 420 447 - -
Adu10g01992 531 MobiDBLite consensus disorder prediction 386 424 - -
Adu10g01992 531 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN 61 529 - -
Adu10g01992 531 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 124 175 IPR000408 -
Adu10g01992 531 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 299 360 IPR000408 -
Adu10g01992 531 MobiDBLite consensus disorder prediction 393 424 - -
Adu10g01992 531 Gene3D - 45 424 IPR009091 -
Adu10g01992 531 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 246 298 IPR000408 -
Adu10g01992 531 SUPERFAMILY RCC1/BLIP-II 95 392 IPR009091 -
Adu10g01992 531 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 184 238 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g01992 Adu-Chr10 89717152 89720017 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g01992 - - pvu:PHAVU_009G110000g 692.575
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu10g01992 10 89717152 89720017 Adu10g01992 10 89717152 89720017 ECH