Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g01913 ATGCTTGTCTCTTCTGCAGGCGGAGGAGGAGGAGGAGGAGGAATCTCATGGGATCTCAAATGGCTTCTGCAGTGGGTTTTCTTAGCGGTTGTCGTCGCCGTTGGATTGCACGCTCTCGTCAAGAACACCGCTTCAAGATACTTTGAGGTTCACGCCAATTTCGATTCTGATCGGACTCATCCCATGCCTTCTTCTCCCTCCGCCGCCGCCGCCGCCATTGCAATGGACCAACCTCTTTGCGCCGTCTGCTCCAAACACGCCTCTAGCAGGTGTTCCCGCTGCAAATCCGTCAGATACTGCTCCCAAGCGTGTCAACAGATGCACTGGAAATCCGATCATAAGTTGAAATGCAAGGAAGTTCATAGTACCATGAATTTGGCTCAATCTGGGCCAGCTAGTCCAGGGTTTAAAGCTTCTGCTGCTGTTAATAAAAGCACATCTTCAATTGCCCTAATACCTGCTTGTGGACGTGAAATTTCCAAGCCGATCAAGCAGCCTAAAAATCCTCTTTTTCCTTATGATGAATTTGTTAAATTCTTTAACTGGGATAAGCCTGGATTTCCTCCTTGTGGGCTCTTGAATTGTGGAAATAGCTGCTTTGCAAATGTGGTTCTCCAATGTCTCTCATTCACAAGGCCGCTTATTGCCTACCTGTTGAAAAACGGCCACCGCAGAGAATGCAGTCGTAATGATTGGTGCTTTCTGTGTGAATTTGAAATCCATGTTGAGAAAGCAAGGCAAAGTTCACAAGCATTTTCTCCAATGAACATTCTCTCTCGTTTGCCTAATATTGGTGGCACACTGGGTTATGGAAGACAAGAGGATGCTCATGAGTTCATGAGGTTTGCAATCGACACTATGCAGTCTGTATGCCTTGATGAATATGGTGGAGAAAAAGCTGTGCCTCCTAACCTTCAAGAGACAACACTTATTCAACACATTTTTGGTGGCCACCTTCAATCTGAGGTGTTTTGCACAAAATGTGAGAAGCAGTCAAATCAATACGAAAACATGATGGACTTGACTGTTGAAATTAATGGAGATGCTTCTTCCTTGGAGGAATGTCTAGATCAGTTCACTGCCAAGGAGTGGCTTCATGGTGAAAATATGTATAAATGTGATGGGTGCAAAGATTATGTCAAGGCTTGGAAACGTCTCACTGTGAAACGAGCTCCAAATATTCTTACTATTGCCTTAAAAAGATTTCAGAGTGGGAGGTTTGGCAAACTTAACAAGAGAGTAACGTTCCCTGAGACTCTAAATCTTAGCCCTTTCATGAGTGAAGTTGAAGATGGATCTGATATTTATAAGCTGTATGCTGTTGTAGTCCACATCGACATGCTGAATGCCTCCTTTTTTGGTCATTACATTTGCTACATTAAGGATTTCCATGGAGACTGGTATAGAATTGATGATTGGAAGGTAATGCAAGTGGAATTGGTGGAGGTACTTTCTCAAGGTGCATACATGTTGTTATACAGCAGGGTAACTGCTCGGCCATCAGGCCTTCAAACTACAGAATCTTCAGACACACACATGCAGACAGTTGAAGTGGAAGTGGAGCCCAGCCCAACTGAACAGGCCGAATGTCTCTCAAATATGGAGACTGTAACTTGCAATGGCACATGTGATGCTTTTCCAGCTGAACATAGTAGTAATTCAGAACTGAAGGTTTCTGCCTGTGAAGAGTCTAAGGACATCCGCTTGATTGATGTTGCAAATGGGACTCCAAGTTGGGCAACCGAATCGTCTCATGTACCTTCTAAATCCGGCAAAGATTTGGAGGATATAGATATGAGGAGATCAAATCTGTGCTCATCTGTTGTGGAAGATATTTTATGCTGCACGGAAGAGCAAGACGATACTGATATGGCTAAGGTCAGTGTTTCTCCACGCTTGGCAAATGGATTTTCTTCCCTGAATGATTCTTCTGTTTCAATGGATTATCAAAACTCGGGGGAAGATCAAGAGCATGTAGAACTTGTCAAATGCAAGCCACTGACAGCACAAGGCCATGCAAATCATGGCAACGGGTATGCTAGTGCAAACAAATATGCTATTCCAGTTGAAGATGATGGCTCTGTGTTTTCTGGCGTTGGTTCTTTCTCCACTGAAACATCCGCATCAGAAATGCATCAATTGAAGCGGAGATTGCCATTTCATGGTTCTGAAACTGGCCACGCAAATGGAGTCAAGAAAGTGGAGGTATCTGGGGACAAGTTAACAACGTCGGATTGGATATCAAGGTTGGATTGTCAACCCACTTCGGTTGAATTAGAACCAATTGGATATCTGCAGGTTGTTGTTGGACCTTTGGGATGTAAGTGGCCGGTAAGAAAGGGTACCATCTTATACGCACGGAAAAAGGAGCAAAGACAAATATTGATGGTGGTGGCAGGGGAAGCTTCCTACCATGGTTCCCCCTCTCTCCGTCCCCTTTGCTTTTCCCTTTCCCTTTCTCTTTCTCTTTTTGGATTTCCTTCTGCACAATTAATACACACGCTCCCATCTCCTCTTCTCTTCTGCAACCAACCACTCTTTCACTTTCACTCTCACTCACTCACTCCAAAGCACCACCAGTTTCCCCTTCTTTCTATTAGTTGTTTTGTCCGATTTCTTTTCTCATCAATGGAACATTCTAGAGATTGGAATGGTCAAGGTAGAAGTCTAAAGAGAAAATCACAAGAAAATGGAGATCATAAACTCCTCAATAACTTTTCTCTTGATGACCTCAATGAGGATCTGTTTGAAAGGATACTTTCATGGCTTCCAACTTCCACATTCTTTCGCCTTACTTCCGTGTCGAAACGGTGGAATTCGGTTGCTGATTCGGCTAGTTTCAAGCTTGCCTGCTCAAGCATTCCTTCCAGGGATCCTTGGTTCTTCATGGTTGCTCCCAACCTTAACCAATCTATAATCTTTGACTCTGCTGAAAGAACTTGGAAAAGACTCAATCACCCCCCACTTTTACATCAAGATTCTAACAAAGGTTGTATGCCGGTTGCTGCCTCCGGTGGCTTGATTTGCTACCGTAATTCATCAGGAAGCTTCATTGTAAGCAACCCTGTGACAGGAACTTGTAGTGAACTCCCTCTGCTTGAGTTTTCCCCTCAAAATCAACCACTCAATGCAATTGTGATGAGCACAACCACCAAAGACCAACAACTATACTACAAAATTGTGTTAGTCTTCGGAGAACTTCAGAATCTTGTGTTTAGAGTCTACAATTCTTTCTCTGGAAGTTGGGAAGGTGAGACTGCTCTAAGGAGAAAGGTTGATGATTGTTCTATGGAGTTTGATTCGACCGAGGACGACAATGTTGTATACTTCCTTAGTAAGGCTGGCATTGTGGTAGCAAGCAACATGCAGAGAAGCCCTTCAAAGCAATATTCGTCGGTCATTACCGACAAAAATGGCGAAGAGATTGTCTATTTTCTTAGCTCCACAGGGACAATCGTAGCTTGCAACCTGACAAGCAAGTGCTACATCGAGTATCCAAGGTTGTTGCCTGTTCTGAGTGAGTATTCAATTGATGTTGTGGAGTGTAATGGGGAGATGCTAGTTGTTCTGTTATCGGAGTTCTTGGAAACCGCGAGTCTTCGTGTGTGGAAGTATGATGAAGCTAAAAGAGGGTGGCACCAGATTGCAGCAACGCCTGCATCAATTTCTCATGAATGGTATGGGAAGAAAGTGGATATTAACTGTGTAGGCGCTGGTAACCAGATATTCATATGCTTGAACTCCTCTGAGCTATGTACTTATGTTCTGTGTGATTTGGTTAGCAACAACTGGGTTGAATTGCCAAATTGTTGCATAAATGGTGAAGTCATAGACTTTATGTCTTCATTTTCATTTGAGCCGAGGATAGAGGCTTCTGTATGA 3882 0.4366 MLVSSAGGGGGGGGISWDLKWLLQWVFLAVVVAVGLHALVKNTASRYFEVHANFDSDRTHPMPSSPSAAAAAIAMDQPLCAVCSKHASSRCSRCKSVRYCSQACQQMHWKSDHKLKCKEVHSTMNLAQSGPASPGFKASAAVNKSTSSIALIPACGREISKPIKQPKNPLFPYDEFVKFFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTRPLIAYLLKNGHRRECSRNDWCFLCEFEIHVEKARQSSQAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFAIDTMQSVCLDEYGGEKAVPPNLQETTLIQHIFGGHLQSEVFCTKCEKQSNQYENMMDLTVEINGDASSLEECLDQFTAKEWLHGENMYKCDGCKDYVKAWKRLTVKRAPNILTIALKRFQSGRFGKLNKRVTFPETLNLSPFMSEVEDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFHGDWYRIDDWKVMQVELVEVLSQGAYMLLYSRVTARPSGLQTTESSDTHMQTVEVEVEPSPTEQAECLSNMETVTCNGTCDAFPAEHSSNSELKVSACEESKDIRLIDVANGTPSWATESSHVPSKSGKDLEDIDMRRSNLCSSVVEDILCCTEEQDDTDMAKVSVSPRLANGFSSLNDSSVSMDYQNSGEDQEHVELVKCKPLTAQGHANHGNGYASANKYAIPVEDDGSVFSGVGSFSTETSASEMHQLKRRLPFHGSETGHANGVKKVEVSGDKLTTSDWISRLDCQPTSVELEPIGYLQVVVGPLGCKWPVRKGTILYARKKEQRQILMVVAGEASYHGSPSLRPLCFSLSLSLSLFGFPSAQLIHTLPSPLLFCNQPLFHFHSHSLTPKHHQFPLLSISCFVRFLFSSMEHSRDWNGQGRSLKRKSQENGDHKLLNNFSLDDLNEDLFERILSWLPTSTFFRLTSVSKRWNSVADSASFKLACSSIPSRDPWFFMVAPNLNQSIIFDSAERTWKRLNHPPLLHQDSNKGCMPVAASGGLICYRNSSGSFIVSNPVTGTCSELPLLEFSPQNQPLNAIVMSTTTKDQQLYYKIVLVFGELQNLVFRVYNSFSGSWEGETALRRKVDDCSMEFDSTEDDNVVYFLSKAGIVVASNMQRSPSKQYSSVITDKNGEEIVYFLSSTGTIVACNLTSKCYIEYPRLLPVLSEYSIDVVECNGEMLVVLLSEFLETASLRVWKYDEAKRGWHQIAATPASISHEWYGKKVDINCVGAGNQIFICLNSSELCTYVLCDLVSNNWVELPNCCINGEVIDFMSSFSFEPRIEASV 1293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g01913 1293 Pfam Ubiquitin carboxyl-terminal hydrolase 190 493 IPR001394 GO:0004843|GO:0016579
Adu10g01913 1293 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 28 665 - -
Adu10g01913 1293 Gene3D - 69 123 - -
Adu10g01913 1293 Gene3D - 902 948 - -
Adu10g01913 1293 ProSiteProfiles Zinc finger MYND-type profile. 80 117 IPR002893 -
Adu10g01913 1293 SUPERFAMILY Galactose oxidase, central domain 971 1270 IPR011043 -
Adu10g01913 1293 SUPERFAMILY Cysteine proteinases 186 516 IPR038765 -
Adu10g01913 1293 SMART fbox_2 911 951 IPR001810 GO:0005515
Adu10g01913 1293 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 28 665 - -
Adu10g01913 1293 Pfam MYND finger 80 117 IPR002893 -
Adu10g01913 1293 Gene3D Cysteine proteinases 186 506 - -
Adu10g01913 1293 SUPERFAMILY F-box domain 902 964 IPR036047 GO:0005515
Adu10g01913 1293 Pfam F-box domain 908 947 IPR001810 GO:0005515
Adu10g01913 1293 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 191 206 IPR018200 GO:0004843|GO:0006511
Adu10g01913 1293 ProSitePatterns Zinc finger MYND-type signature. 80 117 IPR002893 -
Adu10g01913 1293 SUPERFAMILY HIT/MYND zinc finger-like 76 122 - -
Adu10g01913 1293 CDD Peptidase_C19E 189 494 - -
Adu10g01913 1293 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 190 496 IPR028889 -
Adu10g01913 1293 ProSiteProfiles F-box domain profile. 905 950 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g01913 Adu-Chr10 86931404 86941086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g01913 14 519 Miscellaneous Gene Families AT4G31670 60.938 0.0 635
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g01913 K11855 - gmx:100810577 986.867