Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g01856 ATGGAGGAAGATGAAATTGCAGGGTACGTGACAGCGTACCTGAAGAAGAAAGGGTTCACGCAAACGGAGAAGATCTTCCAGGAAGAATTCCAAACCAACAAGACCAATTCTTCCCCTCTCGAACCAGACATTGCCAAGCACATTCTCTCTTTCTCTCAGTTGGAGAGTGGCCCTGCAAGATTTCACGATGGTTATAGCAGACTAAGATCATGGACTCACTGTTCCCTAGATTTGTACAAGCATGAGTTGCTTCGTGTGCTTTATCCAGTGTTTATCCATTGCTTTATGGATCTTGTTGCAAAAGGGCATGTTCAGGAAGCTCGGCACTTCTTCAATACCTTCCGTGAAGATCATGAAATGATGCACTTAAGGGACCTGCAAAAGTTGGAAGGTGTTCTTTCCCCCACTCATCTGGAGGAAATGGAATTTGCCCATTCGCTTAGGCAGAGTAAATTCAACATAAAAATATGTGAGTATTCCTATGAGCTTCTATTGCAACATCTACACAGTACACAATCCACTACTATACTTGGTATTATCAATGAGCATATTAACTTCCAAGTTACTCCTGGACAACCTAGCTCAATTGTTGATGATCCTGAGGCTGTCACCCTTAGTGGAAGCAGCCAAGATGCAGCAAACCAGATAAATCAGAAAGAAATACATTGGGGGTTGCTTGAAGACTCTCTGGAAGAGCGACTGGAAAAGGCTAGCTCCTTGCTTTCGGATTCTGAGAAGGGTGAAGGGGAAGCAAAAGAGGGGGAGACAGAGGAGAATAAGAAACGACCAGTTGAAGGAGGAAAGCAAGGTGCCTCGATCAAAAAGGTAAAGAAGGACAAGGGCGGAAGTGCAACAGGGAAAAACACCAAAGCTGAAGTTAATACTGTATCTGCAGCTCCACGAGTTAAACCAGAACTTCCCATGCCCATAATCCCGAGTGAGGTGGAACAGTCAATCCTTGAAGATTTGAGGAACCGTGTACAACTTAGCAGTGTAGCACTGCCATCAGTTAGCTTTTATACTTTTCTAAATACGCATAATGGTTTAAGCTGTTCATCAATATCCCATGATGGATCATTGGTTGCTGGAGGATTTTCTGATTCATCACTGAAGGTTTGGGATATGGCAAAGCTTGGAGAACAGACTGCCAGTTCTCTTTCACAGGATGAGAATGATACATCACAAAATCCACAAATGGGGCAAAGTGGTGGCGGGAAAAGGCAGTATACATTGTTTCAAGGTCATTCAGGGCCAGTTTATGCAGCCTCTTTTAGTCCAGTTGGAGAGTTTATTCTTTCTTCCTCAGCAGACTCAACTATTCGATTATGGAGCACGACTTACAATGCAAATCTTGTTTGTTACAAAGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTAGGGCATTATTTTGCCAGCTCTTCGCATGACAGAACTGCTAGGATTTGGTCCATGGAAAGGATACAGCCGTTAAGAATAATGGCAGGGCACTTGTCTGATGTTGATTGTGTGCAATGGCATGCCAACTGCAACTACATTGCAACTGGTTCAAGTGACAAAACTGTTCGACTATGGGATGTTCAGAGTGGGGAGTGTGTCCGAGTTTTTGTTGGTCACAGGAGTATGATCTTGTCATTGGCAATGTCTCCTGATGGACGGTATATGGCATCTGGCGATGAAGATGGCACGATCATGATGTGGGACCTCTCTAGTGGCCGCTGTCTCACACCCTTGATTGGTCACACATCATGTGTCTGGTCACTTGCTTTCAGTTGTGAAGGTTCTGTTCTGGCATCTGGATCTGCTGATTGCAGCGTAAAATTATGGGATGTAAATACGAGCACTAAGGTTTCCAGGGCTGAAGAAAAAAGTGGGAATGCTAGCAGACTCAGATCACTGAAAACATTGCCCACCAAATCTACTCCAGTTTATGCTTTGCGGTTTTCTCGAAGGAATCTTCTATTTGCAGGTGGAGCTCTTGCAAAAAATGGCTAA 2001 0.4413 MEEDEIAGYVTAYLKKKGFTQTEKIFQEEFQTNKTNSSPLEPDIAKHILSFSQLESGPARFHDGYSRLRSWTHCSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARHFFNTFREDHEMMHLRDLQKLEGVLSPTHLEEMEFAHSLRQSKFNIKICEYSYELLLQHLHSTQSTTILGIINEHINFQVTPGQPSSIVDDPEAVTLSGSSQDAANQINQKEIHWGLLEDSLEERLEKASSLLSDSEKGEGEAKEGETEENKKRPVEGGKQGASIKKVKKDKGGSATGKNTKAEVNTVSAAPRVKPELPMPIIPSEVEQSILEDLRNRVQLSSVALPSVSFYTFLNTHNGLSCSSISHDGSLVAGGFSDSSLKVWDMAKLGEQTASSLSQDENDTSQNPQMGQSGGGKRQYTLFQGHSGPVYAASFSPVGEFILSSSADSTIRLWSTTYNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMERIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSCEGSVLASGSADCSVKLWDVNTSTKVSRAEEKSGNASRLRSLKTLPTKSTPVYALRFSRRNLLFAGGALAKNG 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g01856 666 CDD TAF5_NTD2 58 190 IPR007582 -
Adu10g01856 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 412 444 IPR001680 GO:0005515
Adu10g01856 666 SUPERFAMILY Taf5 N-terminal domain-like 47 189 IPR037264 -
Adu10g01856 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 580 615 - -
Adu10g01856 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 496 533 - -
Adu10g01856 666 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 1 663 IPR037783 -
Adu10g01856 666 MobiDBLite consensus disorder prediction 236 285 - -
Adu10g01856 666 MobiDBLite consensus disorder prediction 191 210 - -
Adu10g01856 666 Pfam WD40 associated region in TFIID subunit, NTD2 domain 56 184 IPR007582 -
Adu10g01856 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 580 621 IPR001680 GO:0005515
Adu10g01856 666 CDD WD40 412 661 - -
Adu10g01856 666 Gene3D - 491 572 IPR015943 GO:0005515
Adu10g01856 666 Gene3D TFIID subunit TAF5, NTD2 domain 41 189 IPR037264 -
Adu10g01856 666 PANTHER CANNONBALL-RELATED 1 663 - -
Adu10g01856 666 SMART WD40_4 335 374 IPR001680 GO:0005515
Adu10g01856 666 SMART WD40_4 573 612 IPR001680 GO:0005515
Adu10g01856 666 SMART WD40_4 531 570 IPR001680 GO:0005515
Adu10g01856 666 SMART WD40_4 405 444 IPR001680 GO:0005515
Adu10g01856 666 SMART WD40_4 489 528 IPR001680 GO:0005515
Adu10g01856 666 SMART WD40_4 447 486 IPR001680 GO:0005515
Adu10g01856 666 ProSitePatterns Trp-Asp (WD) repeats signature. 361 375 IPR019775 -
Adu10g01856 666 SUPERFAMILY WD40 repeat-like 336 658 IPR036322 GO:0005515
Adu10g01856 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 538 579 IPR001680 GO:0005515
Adu10g01856 666 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Adu10g01856 666 MobiDBLite consensus disorder prediction 236 298 - -
Adu10g01856 666 MobiDBLite consensus disorder prediction 381 407 - -
Adu10g01856 666 ProSitePatterns Trp-Asp (WD) repeats signature. 599 613 IPR019775 -
Adu10g01856 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 496 537 IPR001680 GO:0005515
Adu10g01856 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 412 444 - -
Adu10g01856 666 ProSitePatterns Trp-Asp (WD) repeats signature. 557 571 IPR019775 -
Adu10g01856 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 538 575 - -
Adu10g01856 666 Pfam WD domain, G-beta repeat 343 374 IPR001680 GO:0005515
Adu10g01856 666 Pfam WD domain, G-beta repeat 491 528 IPR001680 GO:0005515
Adu10g01856 666 Pfam WD domain, G-beta repeat 532 570 IPR001680 GO:0005515
Adu10g01856 666 Pfam WD domain, G-beta repeat 409 444 IPR001680 GO:0005515
Adu10g01856 666 Pfam WD domain, G-beta repeat 574 612 IPR001680 GO:0005515
Adu10g01856 666 Pfam WD domain, G-beta repeat 451 486 IPR001680 GO:0005515
Adu10g01856 666 Gene3D - 573 662 IPR015943 GO:0005515
Adu10g01856 666 Gene3D - 209 490 IPR015943 GO:0005515
Adu10g01856 666 ProSitePatterns Trp-Asp (WD) repeats signature. 515 529 IPR019775 -
Adu10g01856 666 ProSiteProfiles Trp-Asp (WD) repeats profile. 454 495 IPR001680 GO:0005515
Adu10g01856 666 PRINTS G protein beta WD-40 repeat signature 431 445 IPR020472 -
Adu10g01856 666 PRINTS G protein beta WD-40 repeat signature 515 529 IPR020472 -
Adu10g01856 666 PRINTS G protein beta WD-40 repeat signature 599 613 IPR020472 -
Adu10g01856 666 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 454 488 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g01856 406 615 Miscellaneous Gene Families AT5G08390 30.047 2.30e-28 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g01856 K03130 - gmx:100781563 1192.18