Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g00872 ATGGCCAGAATTTTCTGGCTTCAAGGAGGAAAACGTTACTGTTTGCAACTGGTATCTTCGTTGCTGGTGGAACAGCTGCATATATGCAATCAAGAGGAGGTTGTGAAGGGTTCTACAGCATCAAAAAATAAACAAAAGAAAGGGGGGTTGAAGTCTCTTCAAGTCCTTGCTGCAATTCTTCTATCTGAGATGGGCAAATTAGGTGCAAGGGACCTTTTAGCTTTAGTTGGCATAGTGGTGTTTCGAACTGCTTTGAGCAACAGGCTAGCAAAAGTGCAAGGCTTCCTATTTCGTGCTGCATTTCTTCGACGAGTGCCATTGTTTTTTCAGCTTATTTCAGAAAATATTCTTTTGTGCTTCCTCTTATCAACCATGCACTCTACATCAAAGTACATAACAGGGACTTTGAGCCTGCATTTCAGAAAAATATTGACGAAGCTAATCCATTCCCACTATTTTGAGAACATGGTGTATTACAAAATATCACATGTAGATGGTCGGATAAATAACCCAGAGCAAAGAATTGCCAGTGATGTGCCAAGGTTCTGTTCAGAATTGAGTGAAATTGTACAGGATGATCTAACGGCAGTTGCTGATGGACTTCTATACACATGGAGGCTGTGTTCATATGCTAGCCCAAAATATGTCTTCTGGATATTGGCCTATGTACTTGGAGCTGGTGCTGCAATCAGAAACTTCTCCCCTTCATTTGGGAAACTTATGTCTAAAGAGCAGCAATTGGAGGGAGAATATCGACAGCTTCACTCACGATTAAGGACTCACTCAGAAAGTATAGCATTTTATGGGGGAGAGAAGAGGGAAGAATCTCATATTCAACAGAAGTTTAAGAACTTGGTTAGACACATGAATGTTGTGTTACATGACCATTGGTGGTTTGGCATGATCCAGGACTTTTTGTTGAAGTACCTTGGTGCTACTGTTGCCGTTATATTGATCATAGAACCTTTCTTTTCTGGTCATCTAAGGCCTGACAGTTCAACTCTAGGGCGTGCAGAGATGTTAAGCAATCTAAGATATCATACAAGTGTCATAATTTCTCTGTTTCAGTCTCTAGGAACTCTTTCTATCAGTGCAAGACGGCTTAATCGTCTCAGTGGGTATGCTGATCGCATTTATGAGTTGATGGCTGTATCAAGGGACCTAAGCATGGTTGATGAGAAATCTTCACTGCAAAGGAAAGGAAGCAAAAATTTCTTAAGTGAAGCTAACTATATTGAATTTTCTGGTGTCAAGGCAAGTAAAGTTGTCACCCCCACTGGTAATGTCTTGGTGGACGATCTGACCCTTAGGGTTGAGTCAGGATCTAATCTTTTGATTACAGGTAGTCCAAATGGCAGTGGAAAGAGCTCGCTTTTCCGTGTTCTAGGCGGTCTTTGGCCGTTGATATCTGGACATATTGTAAAACCAGGCATTGGTGCTGATCTCAACAAGGAGATATTCTATGTGCCACAAAGGCCGTACACTGCTGTGGGAACACTTCGTGATCAATTAATTTATCCTCTCACTGCAGATCAAGAGGTTGAACCACTCACAGAAAGTGGTATGGTGGAGCTATTGAAAAATGTTGACCTTGAATACCTGTTGGACCGTTACCCACCTGAAAAAGAGGTAAACTGGGGCGACGAACTTTCATTGGGTGAACAGCAGAGATTGGGCATGGCTAGACTTTTCTACCATAAGCCAAAATTTGCAATTCTTGATGAGTGCACTAGTGCTGTCACTACTGATATGGAAGAACGGTTTTGTGCTAAAGTACGGGCAATGGGAACATCATGCATTACCATATCACATCGTCCGGCTTTAGTTGCATTCCACGATGTGGTTTTGTCATTGGATGGTGAGGGAGGGTGGAGTGTTCATTACAAAAGGGAGGACTCTTCGACTGAAGTGGGGGTCAATACAATGAAGGCATCTGAGACAAAACGACGGAGTGATGCAAAAGCAGTTCAACGTGCATTTTCCATGAGCAAGAAGGATTATGCATTCTCAAATTCAAAGGCTCAGTCATATATTGCAAAAGTGATAGCATCATCTCCGTCTAAAAATAATGCTGTTTCACCCTCTGCTGTGCCCCAACTTCGTGGTAATACAAGGGTATTACCATTGAGGATAGCTGCAATGTGCAAAGTATTGGTACCCACCGTGTTTGATAAACAAGGTGCACAACTGCTTGCTGTAGCTTTTCTTGTTATTTCAAGAACATGGGTTTCAGACCGTATTGCATCGTTGAATGGTACCACTGTGAAGTTTGTTTTGGAGCAGGATAAAGCTGCCTTTATTCGGTTGATTGGTTTAAGTGTTCTACAAAGTGCTGCATCATCTTTCATTGCACCTTCTATAAGACACTTGACAGCTAGGCTAGCTCTTGGGTGGCGGATTCGTTTGACACAGCATCTACTCAAGAACTACTTGAGAAACAATGCATTCTACAAGGTCTTCCACATGGCAAGCAAAAACATTGACGCAGATCAGAGGATAACTCATGACTTGGAGAAGTTAACAACAGACTTGTCTGGACTGGTCACTGGATTGGTAAAACCATCTGTGGATATCTTGTGGTTCACATGGAGAATGAAGCTGTTAACTGGTCAGAGGGGAGTTGCAATACTCTATGCTTATATGTTACTTGGTCTAGGATTTCTAAGAACTGTTACTCCTGATTTTGGTGATTTGATAAGCCAAGAACAACAACTTGAAGGAACCTTCAGGTTCATGCATGAAAGACTCTGTACTCATGCTGAATCTGTTGCTTTCTTTGGAGGTGGTGCCCGAGAAAAGGCTGTGAAGAGCAGTTCATCTTATATATTTTTCTTTTTCTTGCACCTCATACACAAGAAGTGGTTGTTTGGTATACTGGATGATTTTATCACCAAGCAACTCCCTCATAATGTCACTTGGTTGCTGAGCTTGTTGTATGCCATGGAACATAAGGGAGACCGTGCATCAATAAATACTCAGGGTGAGCTGGCACATGCATTGAGGTTCTTAGCATCTGTTGTTTCTCAAAGCTTTTTAGCTTTCGGTGACATCCTTGAACTGAATAGAAAGTTTGTAGAGCTCTCTGGTGGTATTAATCGGATTTTTGAGCTTGAAGAACTATTGGAGGCAGCACAGTCTGGGAATATGATTGATGCTGATACGTATCCAGTTAGAGATTCTCATTCTAAAGATGTTATTTCCTTTTCAAAAGTTGATATTGTCACTCCTACTCAAAAGATGTTGGCCAGAGAGTTGACATGTGACATTGCGCTTGGCAGAAGTCTGCTCGTTACTGGTCCAAATGGTAGTGGGAAAAGTTCCATTTTCAGAGTTCTTAGAGGACTTTGGCCAATTGCAAGTGGAAGACTATCTAGACCATCTGAAGGTGAGGATCAAGAGGCTGGATCAGGTTGTGGCATTTTCTATGTTCCTCAGCGTCCCTATACTTGCCTGGGAACCCTGCGTGATCAAATTATATATCCCCTGTCCCGTGAGGAAGCAGAAGTTAAAGCATTGAAGATCTACGGAAAAGGTATCTTGGTTCAACTTGCCAGACATGTGTTGGATTCACACTTACAAGTTATCCTAGAGAATGTTCGGTTGAATTATCTTCTAGAGAGGGAGAAGAGTGGCTGGGATGCAACTTTAAACTGGGAAGATATTCTCTCTCTCGGAGAACAACAGAGGCTAGGCATGGCACGGTTGTTCTTCCATAAGCCTAAATTTGGCATCCTTGACGAGTGCACCAATGCCACTAGTGTTGATGTTGAAGAACACTTGTATGGGCTTGCAAAGGAGATGGGAATCACATTTGTTACTTCTTCGCAACGTCCTGCATTAATACCCTTCCATTCCTTGGAACTACGACTGATTGATGGCGAGGGCAACTGGGAGCTTCGTTTGATCAAGCAATGA 3915 0.4232 MARIFWLQGGKRYCLQLVSSLLVEQLHICNQEEVVKGSTASKNKQKKGGLKSLQVLAAILLSEMGKLGARDLLALVGIVVFRTALSNRLAKVQGFLFRAAFLRRVPLFFQLISENILLCFLLSTMHSTSKYITGTLSLHFRKILTKLIHSHYFENMVYYKISHVDGRINNPEQRIASDVPRFCSELSEIVQDDLTAVADGLLYTWRLCSYASPKYVFWILAYVLGAGAAIRNFSPSFGKLMSKEQQLEGEYRQLHSRLRTHSESIAFYGGEKREESHIQQKFKNLVRHMNVVLHDHWWFGMIQDFLLKYLGATVAVILIIEPFFSGHLRPDSSTLGRAEMLSNLRYHTSVIISLFQSLGTLSISARRLNRLSGYADRIYELMAVSRDLSMVDEKSSLQRKGSKNFLSEANYIEFSGVKASKVVTPTGNVLVDDLTLRVESGSNLLITGSPNGSGKSSLFRVLGGLWPLISGHIVKPGIGADLNKEIFYVPQRPYTAVGTLRDQLIYPLTADQEVEPLTESGMVELLKNVDLEYLLDRYPPEKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFCAKVRAMGTSCITISHRPALVAFHDVVLSLDGEGGWSVHYKREDSSTEVGVNTMKASETKRRSDAKAVQRAFSMSKKDYAFSNSKAQSYIAKVIASSPSKNNAVSPSAVPQLRGNTRVLPLRIAAMCKVLVPTVFDKQGAQLLAVAFLVISRTWVSDRIASLNGTTVKFVLEQDKAAFIRLIGLSVLQSAASSFIAPSIRHLTARLALGWRIRLTQHLLKNYLRNNAFYKVFHMASKNIDADQRITHDLEKLTTDLSGLVTGLVKPSVDILWFTWRMKLLTGQRGVAILYAYMLLGLGFLRTVTPDFGDLISQEQQLEGTFRFMHERLCTHAESVAFFGGGAREKAVKSSSSYIFFFFLHLIHKKWLFGILDDFITKQLPHNVTWLLSLLYAMEHKGDRASINTQGELAHALRFLASVVSQSFLAFGDILELNRKFVELSGGINRIFELEELLEAAQSGNMIDADTYPVRDSHSKDVISFSKVDIVTPTQKMLARELTCDIALGRSLLVTGPNGSGKSSIFRVLRGLWPIASGRLSRPSEGEDQEAGSGCGIFYVPQRPYTCLGTLRDQIIYPLSREEAEVKALKIYGKGILVQLARHVLDSHLQVILENVRLNYLLEREKSGWDATLNWEDILSLGEQQRLGMARLFFHKPKFGILDECTNATSVDVEEHLYGLAKEMGITFVTSSQRPALIPFHSLELRLIDGEGNWELRLIKQ 1304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g00872 1304 Pfam ABC transporter transmembrane region 2 56 324 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Adu10g00872 1304 Pfam ABC transporter transmembrane region 2 715 979 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Adu10g00872 1304 CDD ABCD_peroxisomal_ALDP 412 624 - -
Adu10g00872 1304 Gene3D - 399 679 IPR027417 -
Adu10g00872 1304 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 412 647 IPR003439 GO:0005524
Adu10g00872 1304 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 561 1304 - -
Adu10g00872 1304 Gene3D - 1057 1294 IPR027417 -
Adu10g00872 1304 CDD ABCD_peroxisomal_ALDP 1066 1297 - -
Adu10g00872 1304 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 46 565 - -
Adu10g00872 1304 SUPERFAMILY ABC transporter transmembrane region 108 382 IPR036640 GO:0005524|GO:0016021
Adu10g00872 1304 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 116 306 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Adu10g00872 1304 Pfam ABC transporter 432 578 IPR003439 GO:0005524
Adu10g00872 1304 ProSitePatterns ABC transporters family signature. 550 564 IPR017871 GO:0005524
Adu10g00872 1304 ProSitePatterns ABC transporters family signature. 1222 1236 IPR017871 GO:0005524
Adu10g00872 1304 PANTHER ABC TRANSPORTER D FAMILY MEMBER 1 46 565 - -
Adu10g00872 1304 SMART AAA_5 1091 1292 IPR003593 -
Adu10g00872 1304 SMART AAA_5 440 620 IPR003593 -
Adu10g00872 1304 Gene3D ABC transporter type 1, transmembrane domain 70 383 IPR036640 GO:0005524|GO:0016021
Adu10g00872 1304 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1066 1302 IPR003439 GO:0005524
Adu10g00872 1304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 426 620 IPR027417 -
Adu10g00872 1304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1060 1293 IPR027417 -
Adu10g00872 1304 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 561 1304 - -
Adu10g00872 1304 Pfam ABC transporter 1084 1250 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g00872 Adu-Chr10 12881612 12892340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g00872 9 1304 Acyl Lipid Metabolism Gene Families AT4G39850 77.405 0.0 2059
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g00872 K25819 - gmx:100813765 2238