Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g00442 ATGTCTCACAGTTTCACCAATCCCTTGTTCTTATTCTTGGCAATGGATTATATGTTCATTTTTGGAAGTGTCATAGCTTCTAGTTTGGTGCTTGTGCTTTTTCTGTACGGTTCTACATCAAACAAGAGAAAATCCAGTGTTCCAAGTGGAACAACACATGCACAAAGTATAAAGACATCAGAAAATGGTACATGGAATCCACCAGAAGTCTCAGAAGGATGTGATGACATCATCATTGTAGGTGCTGGTGTTGCTGGTGCAGCCCTTGCTTTCACTCTTGGAAAGGATGGAAGACGAGTTCATGTTATCGAAAGGGACTTGAATGAACAAGACAGGATTGTGGGTGAATTGCTTCAACCTGGGGGCTATCTTAAGCTGATTGAGTTAGGACTTGAGGATTGTGTGGATGAAATTGATGCACAACAAGTCTTTGGCTATGCCCTTTACAAAGATGGGAAAAATACCAAGCTCTCTTATCCTTTGGAAAAGTTTAGTTCTGATATTTCCGGTAAAAGCTTTCACAATGGCCGTTTCATCCAAAGAATGCGAGCGAAGGCTTCTTCTCTTCCCAATGTAAAATTAGAACAAGGAACTGTCACATCTCTATTAGAAGAAAATGGAATTGTCAAAGGAGTTCACTACAAAACTAAGAGTGGAGAAGAGCTTACAGCAAAGGCTCCTCTCACCATAGTTTGTGATGGTTGTTTTTCCAACTTAAGGCGTTCTCTTTGCAATCCTAAGGTTGATCTACCATCTTATTTTGTTGGTCTAATCCTGGAGAATTGTAATCTTCCATATGCAAACCATGGACATGTTATCTTAGGTGATCCTTCACCAATCTTGTTTTATCCAATCAGCAGCACTGAAATTCGGTGTTTGGTGGATGTGCCTGGCCAAAAACTACCTTCTCTTGGCAATGGCGACATGGCACTTTATCTGAAAACAGTGGTGGCTCCTCAGGTGCCTTCAGAGCTGCATGATTCTTTTATAGCAACAGTGGAAAAAGGGAACATAAGAAGCATGCCAAATAGAAGCATGCCTGCATCACCATATCCAACACCTGGTGCTCTTCTAATGGGTGACGCATTCAACATGCGTCACCCTTTAACAGGAGGGGGAATGACTGTGGCCTTGTCTGACATTGTTCTGCTAAGAGATCTTCTTAGACCTTTGCGCGATCTCCATGATTCTACTGCTCTTTGCAAGTATCTTGAATCATTCTACACTCTACGTAAGCCAGTGGCATCAACCATAAACACATTGGCAGGTGCATTGTACAAGGTGTTCTGCGCATCACCTGATCCGGCTAGGAAGGAAATGAGGCAAGCATGTTTTGATTATTTGAGCCTTGGAGGTGTGTTCTCTCAGGGACCAATAGCTCTACTCTCTGGTCTCAATCCTCGCCCATTAAGCTTGGTTCTCCATTTCTTTGCTGTCGCTATATATGGCGTTGGCCGCTTGCTCGTGCCATTTCCTTCACCAACACGCATGTGGATTGGAGCTAGATTGATCTCTGGAGCATCAGGTATAATCTTCCCTATTATCAAGGCTGAAGGAGTTAGACAAATGTTCTTCCCAGTAACTGTGCCAGCATACTACAGAACTCCCCCTGTTAATTTGCAGAACTAA 1629 0.4291 MSHSFTNPLFLFLAMDYMFIFGSVIASSLVLVLFLYGSTSNKRKSSVPSGTTHAQSIKTSENGTWNPPEVSEGCDDIIIVGAGVAGAALAFTLGKDGRRVHVIERDLNEQDRIVGELLQPGGYLKLIELGLEDCVDEIDAQQVFGYALYKDGKNTKLSYPLEKFSSDISGKSFHNGRFIQRMRAKASSLPNVKLEQGTVTSLLEENGIVKGVHYKTKSGEELTAKAPLTIVCDGCFSNLRRSLCNPKVDLPSYFVGLILENCNLPYANHGHVILGDPSPILFYPISSTEIRCLVDVPGQKLPSLGNGDMALYLKTVVAPQVPSELHDSFIATVEKGNIRSMPNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVLLRDLLRPLRDLHDSTALCKYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGVFSQGPIALLSGLNPRPLSLVLHFFAVAIYGVGRLLVPFPSPTRMWIGARLISGASGIIFPIIKAEGVRQMFFPVTVPAYYRTPPVNLQN 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g00442 542 Pfam Squalene epoxidase 225 498 IPR013698 GO:0004506|GO:0016021|GO:0050660
Adu10g00442 542 Gene3D - 75 455 IPR036188 -
Adu10g00442 542 Pfam NAD(P)-binding Rossmann-like domain 79 105 - -
Adu10g00442 542 PANTHER SQUALENE MONOOXYGENASE-RELATED 15 541 - -
Adu10g00442 542 MobiDBLite consensus disorder prediction 40 64 - -
Adu10g00442 542 PANTHER SQUALENE MONOOXYGENASE 15 541 IPR040125 GO:0004506|GO:0016126
Adu10g00442 542 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 76 98 - -
Adu10g00442 542 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 225 240 - -
Adu10g00442 542 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 353 368 - -
Adu10g00442 542 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 368 384 - -
Adu10g00442 542 SUPERFAMILY FAD/NAD(P)-binding domain 76 450 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g00442 Adu-Chr10 5115791 5119177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g00442 56 537 Miscellaneous Gene Families AT1G58440 77.801 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g00442 K00511 - gmx:100796946 882.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu10g00442 10 5115791 5119177 Adu10g00442 10 5115791 5119177 ECH
Adu03g03288 03 119291083 119294087 Adu10g00442 10 5115791 5119177 PCT