Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g00307 ATGCAGCGTTTGTCAGCAACGTTGTACCGGAAGGTTGCTCGTCCGGCGTGTGACGTGTTCATCAACCACCGTGGGATCGACACGAAGCGAAACATCGCCGGGCTGTTGTACGACAGCCTCACGAGGAATGGTGTAAGATCTTTCTTGGACAGCAAGAATATGAAGCCTGGGGATAGACTCTTTGATCACATTGATAGGGCTATTGTTGGAAGCAAGGTTGGTGTTGCCGTCTTCTCTCCTCGCTATTGCGACTCCTATTTCTGTCTCCATGAGCTCGCTCTGCTCATGGAGTCCAGAAAGAGGGTCGTTCCCATCTTTTTCGACGTCAAACCTTCGAATCTTCGTGTTAAGGATAATGGAACTTGTCCTCCTAACGAGCTTCGAAGGTTTGACTTGGCTCTCCAGGAAGCTAAGAACATTGTGGGTTTAACCTTTGATTCTTCTAAAGGGGACTGGTCGGAGTTGTTAAGGGATGCTTCGGACGCAGTGATGGTGAACTTGATGGAGGTAGAGGAAGAAAGAAAGCGCATGAAGACGAGGGTGTAA 546 0.4908 MQRLSATLYRKVARPACDVFINHRGIDTKRNIAGLLYDSLTRNGVRSFLDSKNMKPGDRLFDHIDRAIVGSKVGVAVFSPRYCDSYFCLHELALLMESRKRVVPIFFDVKPSNLRVKDNGTCPPNELRRFDLALQEAKNIVGLTFDSSKGDWSELLRDASDAVMVNLMEVEEERKRMKTRV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g00307 181 Gene3D - 12 171 IPR035897 -
Adu10g00307 181 Pfam TIR domain 19 114 IPR000157 GO:0007165
Adu10g00307 181 ProSiteProfiles TIR domain profile. 15 163 IPR000157 GO:0007165
Adu10g00307 181 PANTHER COP1-INTERACTING PROTEIN-RELATED 11 179 - -
Adu10g00307 181 PANTHER TOLL-INTERLEUKIN-RESISTANCE (TIR) DOMAIN FAMILY PROTEIN 11 179 - -
Adu10g00307 181 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 142 IPR035897 -
Adu10g00307 181 SMART till_3 16 162 IPR000157 GO:0007165
Adu10g00307 181 Coils Coil 167 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g00307 Adu-Chr10 3670980 3671618 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g00307 12 146 Miscellaneous Gene Families AT1G57670 30.000 1.99e-17 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g00307 - - gmx:100798207 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu10g00307 10 3670980 3671618 Adu10g00307 10 3670980 3671618 ECH
Adu03g03365 03 120469196 120469959 Adu10g00307 10 3670980 3671618 PCT