Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu10g00278 ATGGCGTTGAAGCTTGTTAGCAGAGTGGTGGCGCAAATTGCGAACACGAGAAGCAGATCATACTACACGAGCAGGACGAAGAAGCTAAGCCTTTACTCCAAGATTAGCCCACTTGGAAACCCTACCACAAGCATGGAACCCGAGCTCGACGATTGGGTCTACAAGGGTAACAAGGTTCGAGTTGGAGAGCTTCAGCGCATCGTTCGCGACCTTCGCAAGCGCAGGAGGTTCGCCCAGGCACTCGAGGTATCTGAGTGGATGAATAAGAATGGTGTGTGCATATTTTCTCCAGTTGAACATGCAGTGCATTTGGATTTGGTTGGCAAGGTTCATGGATTTCAGTCTGCTGAATGCTATTTTGACAGCTTGAAGGACCAAGACAAAATTGATAAGACATATGGTGCTCTCTTGAATTGCTATGTTCGCCAGCGCCAAATTGAGAAGGCTCTCTCCCATTTCCAGAAAATGAAGGAGCTGGGGTTCGCTTCGACACCTCTAACCTACAACGATATTATGTGTTTGTACACAAATATTGGACAGCATGAGAAGGTCCCCAATGTGTTAACTGAGATGAAAGAAAACGGGATTTTGCCTGACAACTTCAGCTACAGAATATGTATAAATTCTTATGGCGTGAGGTCTGATGTCACTGAAATGGAGAGAATATTGAAAGAGATGGAGAGTCAACCGCACATTTTGATGGAGTGGAACACTTATTCTGTTGTGGCTAATTTCTATATAAAAGCAGGGTTCGAGGGTAAGGCAGTTGATGCTTTAAGGAAATCTGAGGAGAGGCTAGATAACAAAGATGGTATCGGTTACAATCATCTCATCTCTCTTTATGCACAACTGGGCAACAAGAATGAGGTCCTAAGAGTATGGGAGTTGGAGAAAAGTTCTTGCAAAAGATGCTTAAACAGGGATTTTACAACCATGTTAGAATCTCTGGTGAAGCTCGGTGAGCTGGACGAAGCAGAGAAAATACTGAAGGAATGGGAATCCTCTGGCAACTGTTACGATTTTTCAGTCCCAAACACTATAATCATTGGGTACGCAGAGAAGGGTTTGTATGAGAAGGCTGAAGCCATGCTGGAAGATTTACAGAACACTGGAAAGGTGACGACTCCGAACAGTTGGACTGTGGTGGCAGGTGGATACCTGCATACGGGTGAGATGGAGAAAGCTTTGAGGTGCCTTAAAACAGGTCTGTCTTTGTATGTTGACAATAAAGGATGGAAGCCAAACCCCAAGGTGATCTCTGGTGTATTGAGATGGATTGGTGACAATGGAACTGTCACAGACGCAGAAAATTTAGTGAGTTCATTAATAAATGTTGTCCCAGTAAATAGACAAATGTACCATGCCCAAATCAAGACTTACATTAGAGAAGGTAAAGAAGTGGATGGACTTTTGGACAGCATGAAAAAAGACAACATTGATGAAAACGAAGAAACTAGGGAAATTGTTCAAATGAGGAAGCTGTAG 1485 0.4357 MALKLVSRVVAQIANTRSRSYYTSRTKKLSLYSKISPLGNPTTSMEPELDDWVYKGNKVRVGELQRIVRDLRKRRRFAQALEVSEWMNKNGVCIFSPVEHAVHLDLVGKVHGFQSAECYFDSLKDQDKIDKTYGALLNCYVRQRQIEKALSHFQKMKELGFASTPLTYNDIMCLYTNIGQHEKVPNVLTEMKENGILPDNFSYRICINSYGVRSDVTEMERILKEMESQPHILMEWNTYSVVANFYIKAGFEGKAVDALRKSEERLDNKDGIGYNHLISLYAQLGNKNEVLRVWELEKSSCKRCLNRDFTTMLESLVKLGELDEAEKILKEWESSGNCYDFSVPNTIIIGYAEKGLYEKAEAMLEDLQNTGKVTTPNSWTVVAGGYLHTGEMEKALRCLKTGLSLYVDNKGWKPNPKVISGVLRWIGDNGTVTDAENLVSSLINVVPVNRQMYHAQIKTYIREGKEVDGLLDSMKKDNIDENEETREIVQMRKL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu10g00278 494 Pfam PPR repeat family 167 210 IPR002885 -
Adu10g00278 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 129 163 IPR002885 -
Adu10g00278 494 Gene3D Tetratricopeptide repeat domain 40 171 IPR011990 GO:0005515
Adu10g00278 494 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 164 198 IPR002885 -
Adu10g00278 494 PANTHER OS07G0598500 PROTEIN 16 493 - -
Adu10g00278 494 Pfam PPR repeat 378 400 IPR002885 -
Adu10g00278 494 Pfam PPR repeat 345 368 IPR002885 -
Adu10g00278 494 Pfam PPR repeat 309 336 IPR002885 -
Adu10g00278 494 Pfam PPR repeat 274 295 IPR002885 -
Adu10g00278 494 Pfam PPR repeat 132 161 IPR002885 -
Adu10g00278 494 TIGRFAM PPR: pentatricopeptide repeat domain 309 339 IPR002885 -
Adu10g00278 494 TIGRFAM PPR: pentatricopeptide repeat domain 167 199 IPR002885 -
Adu10g00278 494 TIGRFAM PPR: pentatricopeptide repeat domain 132 161 IPR002885 -
Adu10g00278 494 PANTHER OS12G0527900 PROTEIN 16 493 - -
Adu10g00278 494 Gene3D Tetratricopeptide repeat domain 375 493 IPR011990 GO:0005515
Adu10g00278 494 Gene3D Tetratricopeptide repeat domain 186 307 IPR011990 GO:0005515
Adu10g00278 494 Gene3D Tetratricopeptide repeat domain 308 373 IPR011990 GO:0005515
Adu10g00278 494 SUPERFAMILY TPR-like 236 406 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu10g00278 Adu-Chr10 3344668 3346803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu10g00278 30 477 EF-hand Containing Proteins AT1G02150 33.766 1.56e-83 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu10g00278 - - gmx:100805658 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu10g00278 10 3344668 3346803 Adu10g00278 10 3344668 3346803 ECH