LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu09g02380	ATGGGAAAACAAAAGCAGCAAGTCATTTCACGTTTTTTCGCTCCCAAACCTAAAGCCTCTCCATCAACAACTGATCCAACACCTTCTTCACCTCCTCCTTCTCCTCTTCCTTCCTCTTCTCGCCCCAATCCTCCAACCCCCAAAATCTCCGCCACCGTCACTTTCTCACCATCCAAACGGCTTCTTACTTCTCAAATCATTTCCCCCAACAAGCCACCAAAGCTCCCCAAACTCTCCCCTCACACCCATAACCCTCTTCCCCACCCCACCACCCATCAACGCTTCCTCCAGAAACTTCTAGAACCTTCTGAGCCCGAGCCACCTTCCCATTCTTCTGCCAAACCCTTAAAGTACACTCCTTTGGAGCAGCAAGTGGCCGAGCTCAAAGGAAAGTACCCTGATGTTCTTTTGATGATCGAGGTTGGATACAGGTTCCGTTTTTTCGGCCAAGATGCTGAAAATGCTGCCAGGGTATTGGGTATATATGCGCATATGGATCGTAACTTTTTAACTGCTAGCATACCAACTTTTCGATTGAATGTCCATGTGAGGAGGCTTGTGAGTGCTGGCTATAAGGTTGGTGTGGTTAGGCAGACTGAGACAGCGGCTATTAAGGCTCATGGTTCAAACCGGCTAGGCCCATTTTGCAGGGGATTATCAGCATTGTACACGAAGGCCACACTTGAGGCAGCACCGGATTTGGGGGGAGGGGAAGAGGGGTGTGGGGCAGAGAGCAATTACTTGATGTGTGTGGTGGAGAAGAGCATTTTGGGAGAGAGGTCTGCGTGTGGGGTGGAGGGTAATTTTGATGTGAGGATTGGATTTGTTGCAGTGGAGATATCAACAGGGGATGTTATTTATGGGGAATTCGATGACAATTTCTTGAGGAGTGCACTTGAGGCTGTGATGTTGAACTTATCTCCCGCTGAGTTGCTTCTTGGGGACCCTCTTTCCAAACAAACGGAGAAGTTATTGCTGGCTTTTGCTGGGCCTGCTTCAAACGTTCGTGTGGAGCGAACCTCTCGAGATTGCTTCGCTGATGGAGGTGCTCTTGCAGAAGTCTTGACCTTGTATGAGAACATGGGTATAGGATGTTCATCAGATTCAATGCAAAACAAAGATTTGACCGAGCACACTAATCAGCCATTAGTTAAGGAGGTGATGAACATGCCAGATTTGGCTGTCCAATCTTTGGCCTTAACAATTCACCATTTAAAGGAATTTGGGTTTGAAAGAATTGTATGCTCAGGTTTTTCTTTAAGGCCATTCTCAAGAAATATGGAAATGACCTTTTCAGCCAATGCGCTTCAACAACTGGAGATTTTAAAAAATAATAGTGATGGATCTGAGAATGGGTCCTTGCTGCAAATTATGAATCGCACCCTTACTATATTCGGTTCCAGGCTTCTTAGGCATTGGGTATCTCACCCATTATGCGATCAGACCATGATTTCTGCTCGTCTTCATGCTGTATCTGAAATTGCAGAGTCCATGAGCTCTTGTAGCATGAAGAGCCTAGAGTATGACGAAGACTCTGATGTAACAATTGTGCATCCCGAGTTAGCTTACATAGTTTCTTTGGTTTTGACGAATCTGAGCCGAGCACCTGATTTACAACGCGGGGTTACAAGAATATTCCATTGCACTGCTAAGCCAGTTGAGTTTGTTGCAGTTATTCAAGCTATTTTGTCAGCTGGAAAACAGCTTCAGCAACTTAACATATGCGAGGAGGAAAACAATAATTTGCGTTCTAATCTGTTGAGAAGACTGATTCTGACTGCCTCCTCTGACAGTGTTATTGGCAATGCTACAAAAATGTTGTCTTCTTTAAACAAAGAATCTGCTGATCAAGGCGATCTAACAAATTTGATCATTGCATCTGAGGCACAATTTCCAGAGGTTACTAGAGCTCGGAAAGCTTTTCAAATGGAAGAGGAACAATTAAATTCATTGATCGTCTTGTATCGCAAGCGCCTTGGAATGCGGAAATTGGAATTCATGAGTGTTTCTGGAATTACTCATTTGATAGAGTTGGAGACTGATGTTAAGGTTCCTTCAAACTGGGTTAAGGTTAATAATACAAAGAAAACAATTCGGTATCACCCTCCTGAAGTGGTGACAGCTTTGGACAAGGTATCTTTAGCAAAAGAAGAGCTTACTATTGCCTGCCGAACTGCTTGGGATAGCTTTCTGAGGGATTTCAGTAAACATTATGCTGAGTTCCAAGCTGCTGTTCAAGCTCTGGCGGCTTTAGACTGCCTCCATTCCCTTGCCATTCTTTCAAGAAATAAGGGGTATGTTCGGCCAGTGTTTGTAGATGATTGTGAGCCTGTTCAGATACAAATTTGTGCTGGTCAGCATCCGGTTTTGCAGACTACCTTACAAGACAACTTTGTCCCAAATGATACAAACTTGCATGCTGACAGAGAGTACTGCCAGATTGTCACTGGACCCAATATGGGGGGGAAAAGTTGCTATATTCGCCAGGTGGCATTGATTGCTATAATGGCTCAGGTTGGTTCCTTTGTACCAGCATCATCAGCAAAACTGCATGTCCTGGACAGAATCTACACTAGGATGGGTGCTTCTGACAGTATTCAGCAAGGGAGAAGCACCTTCCTAGAAGAACTGTCTGAGACTTCAAATATTCTTCATAACTGCACAGAAAATTCACTGGTTATCATTGATGAGCTTGGGAGAGGTACAAGTACACATGACGGTATGGCCATTGCTTATGCGACATTGCACTATCTTCTGAAGCAAAAACGAAGCATCGTCCTCTTTGTCACTCATTATCCGAAGATTGCAGACCTCACAACCGAATTCCCTGGCTCTGTGGGAGCATATCACGTGTCACATCTAACCTCACATCATGATACAAGTAAAAACAAAAACTCTTATCTTGATAATATAACTTATCTATACAAGCTCGTACCTGGTGTTTCAGAGAGAAGTTTCGGATTTAAGGTGGCTCAGCTAGCACAGTTACCACCACATTGCATTACTCGTGGCATTTTCATGGCTTCCAAATTGGAAGAGCTAGTGAACAATAGAATACATAGTAGATCGGTGAAGGAGCTGTTGTTGGATGCAATAGTGATTGGTCAAGAACAGGAATCACATCAAGAGTTTGGTAGTGCTTACAAGGAACTCTATTCAAACTTAAAAGCTGCAATTCTAGATGATGACCATGCAAAAAGCTTTCAGCTTCTGGATCATAGCAGAAAAATTGCAAAGAAATTAATTGGCAGACATTAA	3258	0.4377	MGKQKQQVISRFFAPKPKASPSTTDPTPSSPPPSPLPSSSRPNPPTPKISATVTFSPSKRLLTSQIISPNKPPKLPKLSPHTHNPLPHPTTHQRFLQKLLEPSEPEPPSHSSAKPLKYTPLEQQVAELKGKYPDVLLMIEVGYRFRFFGQDAENAARVLGIYAHMDRNFLTASIPTFRLNVHVRRLVSAGYKVGVVRQTETAAIKAHGSNRLGPFCRGLSALYTKATLEAAPDLGGGEEGCGAESNYLMCVVEKSILGERSACGVEGNFDVRIGFVAVEISTGDVIYGEFDDNFLRSALEAVMLNLSPAELLLGDPLSKQTEKLLLAFAGPASNVRVERTSRDCFADGGALAEVLTLYENMGIGCSSDSMQNKDLTEHTNQPLVKEVMNMPDLAVQSLALTIHHLKEFGFERIVCSGFSLRPFSRNMEMTFSANALQQLEILKNNSDGSENGSLLQIMNRTLTIFGSRLLRHWVSHPLCDQTMISARLHAVSEIAESMSSCSMKSLEYDEDSDVTIVHPELAYIVSLVLTNLSRAPDLQRGVTRIFHCTAKPVEFVAVIQAILSAGKQLQQLNICEEENNNLRSNLLRRLILTASSDSVIGNATKMLSSLNKESADQGDLTNLIIASEAQFPEVTRARKAFQMEEEQLNSLIVLYRKRLGMRKLEFMSVSGITHLIELETDVKVPSNWVKVNNTKKTIRYHPPEVVTALDKVSLAKEELTIACRTAWDSFLRDFSKHYAEFQAAVQALAALDCLHSLAILSRNKGYVRPVFVDDCEPVQIQICAGQHPVLQTTLQDNFVPNDTNLHADREYCQIVTGPNMGGKSCYIRQVALIAIMAQVGSFVPASSAKLHVLDRIYTRMGASDSIQQGRSTFLEELSETSNILHNCTENSLVIIDELGRGTSTHDGMAIAYATLHYLLKQKRSIVLFVTHYPKIADLTTEFPGSVGAYHVSHLTSHHDTSKNKNSYLDNITYLYKLVPGVSERSFGFKVAQLAQLPPHCITRGIFMASKLEELVNNRIHSRSVKELLLDAIVIGQEQESHQEFGSAYKELYSNLKAAILDDDHAKSFQLLDHSRKIAKKLIGRH	1085

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Adu09g02380	1085	Gene3D	-	433	758	-	-
Adu09g02380	1085	SUPERFAMILY	DNA repair protein MutS, domain III	433	763	IPR036187	-
Adu09g02380	1085	Gene3D	MutS, connector domain	242	428	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Adu09g02380	1085	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	92	1080	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Adu09g02380	1085	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	766	1013	IPR027417	-
Adu09g02380	1085	Gene3D	-	766	1047	IPR027417	-
Adu09g02380	1085	Pfam	MutS domain I	119	229	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Adu09g02380	1085	Pfam	MutS domain III	434	758	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Adu09g02380	1085	SUPERFAMILY	DNA repair protein MutS, domain II	244	325	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Adu09g02380	1085	MobiDBLite	consensus disorder prediction	1	92	-	-
Adu09g02380	1085	PIRSF	Msh6	107	1062	IPR017261	GO:0006298\|GO:0030983
Adu09g02380	1085	Pfam	MutS domain II	246	331	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Adu09g02380	1085	PRINTS	Proline rich extensin signature	15	31	-	-
Adu09g02380	1085	PRINTS	Proline rich extensin signature	32	49	-	-
Adu09g02380	1085	PRINTS	Proline rich extensin signature	69	94	-	-
Adu09g02380	1085	PRINTS	Proline rich extensin signature	107	119	-	-
Adu09g02380	1085	SMART	DNAend	449	793	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Adu09g02380	1085	SUPERFAMILY	DNA repair protein MutS, domain I	113	227	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Adu09g02380	1085	MobiDBLite	consensus disorder prediction	21	44	-	-
Adu09g02380	1085	MobiDBLite	consensus disorder prediction	45	70	-	-
Adu09g02380	1085	Gene3D	DNA repair protein MutS, domain I	109	233	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Adu09g02380	1085	Pfam	MutS domain V	813	1010	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Adu09g02380	1085	SMART	mutATP5	810	1009	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Adu09g02380	1085	ProSitePatterns	DNA mismatch repair proteins mutS family signature.	891	907	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Adu09g02380	1085	PANTHER	DNA MISMATCH REPAIR PROTEIN MSH3	92	1080	-	-
Adu09g02380	1085	Gene3D	-	608	734	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu09g02380	Adu-Chr9	111093324	111099600	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu09g02380	K08736		-	gmx:100789883	1576.22

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Adu09g02380	09	111093324	111099600	Adu09g02380	09	111093324	111099600	ECH