Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g02372 ATGGAGTCTGAAGTAGTTCGTAGTCATCAAGAACAAGATGAGAATGATGAACAACAACCACCCTTCAATGATGCTGCTTCACAACTCGAAGAACAAAATAGTGATCCTGAGAAGAAGTCATCGGTTATGAACAAGGTGAAGGCAAGGGCTAAGAAGATTAAGGATACAGTAAAGAAGCATGGTCAACGAGTCCTTGATCATGTTCATGACAATAGCAGTAGTGAAGATCAGAACAGTCCTGTTCATCATGACATCAATGAGCCTGAAAACCAACAAGTTGATAGAGAATTAGTTGATGAAAGTGGAGATGTTAAAGATGCTCCACCAACGTATCAGCAAGTCAAAAATTATGTTAAAAATGCTGCAACGGAATCTGAGCAAGTAGAAAATTTGGGCAAGTCAGAAGCCAATTATGGTGGCACAACAAATATGGGAGAAGAACCTCAGGACAAGGCAGGAACTGTAGGTGTTGTTTCTCCAACTGATGAAAACATAGCCACTGAGGAAGTAAAGGAAGGGCATTCTAAGGACAATTTGGAGAATATATCTGAGGCATACACTGCTACTCAAAATTATCAAACTGGAACAGTTGGTGAAAGTGAAGCTGTTCAAAGTTCTCCCCCAACATATGACCAAGTGGAAGATTTTGTTAAAAGTGCTGAACCAGAACCTGAGCAAGTTGAAAATCTGGACAAGTCAGTACCAAGTTCTGGAGGTACAACACCATTTGTGGGAGAAGTACCTCATCACCAGCCAAGAGTTGTTGGTGCTTCTCCAACTACAGAAACTAATGAAGACATAACCACTGAACCAGCTAAAGCATTTGCTGAGGAAGAGAAATTTAAGGGAAATTTGGAGAATCCAACAAGCTTGGGTGAAGAACTGCACCCGCCGGGAAGTAGGCCTGAGGCATACACTATTCCTCCCAGTTATCAAACAGAAGACACTGATTCAATAGGGAAAGGTCCTGATGATGAAATAAAGATTAAAGAAGTGGAGAAATCTTTTGAGGAGAAGATCAAAGATGATCCAAAGTCTGTTCTAGTGCCAAAATTCCTGCCAGATTCTGCTGAAACTCAAGACTCTTTTGATGGAAACAAAGATCAATCTGTGCAAAAGCCAGACCCTCAACTCTCAAGTGCAACTAAAACCGAGCACCCTCCTGATCATGAAAACCATGAACGAGACTTGCCAGAGCTTGTGCAAGAGAAGGAAACTCAGTTTGCTTCAGATACTATATCCTCAAGTACCAGCAGCCACAGGGAAAATCCTGAAGCAACTGAACAAACTTTCAACAGCAACATATCCAGAGATGAAATGGAGAATCCATCAAAGGAAAAGAGTTACTCAGATGAGATATCATCTGCCACTTCTGCAATTGCTGCTGATAGGGCTGTCTCTGCTGAAGATGTTGCTGCTGTTCCTAAGAGTGATCATGGAGACGACAAGGTGACCACCCTTGAAGAGGGAAAACGTGAGGATTCTTCTAACAAGTCAGGAAAGAACATTGCTACCTCTGTGACAGAGAAACTTGCTCCAGTTTATGGGAAGGTTGCTGGTGTGGGAAGTGCAGTGAAGTCTAAAGTGTCCGGAACCAGATCAGATGACAGTGTTGGAGTTGAAACAGAAAATGTGGACAAAGGAGAAGACAAAAGGGTGAATGTGAAGGACTATTTGGCTGAGAAGCTAAAGCCTGGTGAAGAGGACAAGGCACTTTCTGAGGTGATTTCAGAAGCTTTTAACAAGCGTAAAGAAGATCCAAAGAAGGCTTGTGAGGGTGAGGATGCTATAAAGAAGCAAGGAGAAGAGGCAAAGGAAAAAGTGAAGTCAGAGACAGTGGCTGAAACTGAAGAGAGCAATGTGAGTAGTCCAGGAAAAAGTGTGGTTGGTAAGATTAAAGGTGTTGTTGGCTCTTGGTTTGGTGGCAAATCAGAGGAGAATCAATCATCATCAAAGGGAGGTGAAGATTTAACATTGAACAAGAATAGTGGTGAAATCCAGGCTGAAGGGTCTATTGAGATATTCACACAAGTTGTGATAGAAGAAAAGAGAAGTGGTAGAGCACCTGCAACGCTGTCTCGATCAAAACGCCAAAGTATCGTTCAACACGTAACTCTTTTAGGTCCAAGAATAGTTCACAAGATTCCCCATTGCTTGATTATGTCACGGAAATTATGTGACGGTATTTTTCATGGTGATGATGGGTTTGAATGCGTCGAGGAACCTTTAAAAAGGATAGTTTCGGAGTATGATTCCAACGAGGGTGAAAGGCTCCATGTGGATGAGGATTGGAGCTGTAACCATAATCAGTTTTCGCTTAGAAGAGAGTTCTTAGAGAATGTGAAGCTAGATGCCAAGAAGGTCCTTGAGGTTCTTCGACAAGATGGACCAGGTCTTGATGCTAGGTTAGTTTTAGATGAATTGAATGTAAGTCCGTCCGGGATTCTTGTCAGAGAAGTTCTCGCTGGAATCTTGAAGAGCATAAATTTTGAGAATAAAACCAGGTGTGCCAAATTGGCATACAAGTTTTTAGTGTGGTGCAATCAGCAGGAGGATTACAGGCCCACTTCAAATGCATATCACCTGATGATGAACATATATGCCGAGTGCCTGGAGTTTAAGGCTTTGTGGAGGTTGGTTGATGAGATGATCGAGAAAGGGTTTCCTGCTACTGCTCGTACGTTCAACATTTTGATTCGAACTTGTGGTGAGGCAGGTTTAGCTAAGAAATTGGTGGAGAGGTTTATTAAATCAATGAATTTTAATTATAGGCCTTTTAAGCACTCCTACAATGCGATTCTGCATGGTCTTTTTGTGTTAAGCCAGTACAAGTTGATTGAGTGGGTTCATCAACAAATGTTGCTGGAGGGTTTTTCTTCAGATGTTTTAACATACAATATTGTCATGTTTTCTAAGTACAAACTTGGAAAGATGGATCAGTTCCACATACTGCTGGATGAGATGGGTAGGAATGGATTTTCTCCAGATTTTCACACCTATAACATTCTTCTTCATGTTCTTGGTAAAGGAGACAAGCCCCTTGCAGCTCTTAATCTTCTAAATCTCATGAGAGAAACAGGTATAGAGCCAACAGTGCTTCATTACACCACATTGATAGATGGACTCAGCAGAGCTGGGAATGTGGATGCATGCAAATACTTTTTTGATGAAATAATAAAGAATGGGGGCACGCCTGATGTGGTGGCTTACACTGTAATGATAACAGGATATGTAGTGGCAGGTGAGCTTGAGAAAGCTCTGGAAATGTTTCGAGAGATGATTTCTAGAGAACAGGTCCCAAATGTGTTTACATACAATTCCATAATTCGGGGATTATGTAAGGCACGAAAGTTCAAGGAAGCCTGCTCAATGCTCAAGGAGATGGAGACCAAAGGTTGTAGTCCAAATTTTGTTGTCTATAATACATTAGTGAGTAGTTTGCGCAATGCCGGAAGAACCAACGATGCTCATGAAGTGATAAAACAGATGATGGAGAAGCGGAAGTATGGTCACATACTTTCGAAATTTCAAAAGGACTAA 3540 0.4158 MESEVVRSHQEQDENDEQQPPFNDAASQLEEQNSDPEKKSSVMNKVKARAKKIKDTVKKHGQRVLDHVHDNSSSEDQNSPVHHDINEPENQQVDRELVDESGDVKDAPPTYQQVKNYVKNAATESEQVENLGKSEANYGGTTNMGEEPQDKAGTVGVVSPTDENIATEEVKEGHSKDNLENISEAYTATQNYQTGTVGESEAVQSSPPTYDQVEDFVKSAEPEPEQVENLDKSVPSSGGTTPFVGEVPHHQPRVVGASPTTETNEDITTEPAKAFAEEEKFKGNLENPTSLGEELHPPGSRPEAYTIPPSYQTEDTDSIGKGPDDEIKIKEVEKSFEEKIKDDPKSVLVPKFLPDSAETQDSFDGNKDQSVQKPDPQLSSATKTEHPPDHENHERDLPELVQEKETQFASDTISSSTSSHRENPEATEQTFNSNISRDEMENPSKEKSYSDEISSATSAIAADRAVSAEDVAAVPKSDHGDDKVTTLEEGKREDSSNKSGKNIATSVTEKLAPVYGKVAGVGSAVKSKVSGTRSDDSVGVETENVDKGEDKRVNVKDYLAEKLKPGEEDKALSEVISEAFNKRKEDPKKACEGEDAIKKQGEEAKEKVKSETVAETEESNVSSPGKSVVGKIKGVVGSWFGGKSEENQSSSKGGEDLTLNKNSGEIQAEGSIEIFTQVVIEEKRSGRAPATLSRSKRQSIVQHVTLLGPRIVHKIPHCLIMSRKLCDGIFHGDDGFECVEEPLKRIVSEYDSNEGERLHVDEDWSCNHNQFSLRREFLENVKLDAKKVLEVLRQDGPGLDARLVLDELNVSPSGILVREVLAGILKSINFENKTRCAKLAYKFLVWCNQQEDYRPTSNAYHLMMNIYAECLEFKALWRLVDEMIEKGFPATARTFNILIRTCGEAGLAKKLVERFIKSMNFNYRPFKHSYNAILHGLFVLSQYKLIEWVHQQMLLEGFSSDVLTYNIVMFSKYKLGKMDQFHILLDEMGRNGFSPDFHTYNILLHVLGKGDKPLAALNLLNLMRETGIEPTVLHYTTLIDGLSRAGNVDACKYFFDEIIKNGGTPDVVAYTVMITGYVVAGELEKALEMFREMISREQVPNVFTYNSIIRGLCKARKFKEACSMLKEMETKGCSPNFVVYNTLVSSLRNAGRTNDAHEVIKQMMEKRKYGHILSKFQKD 1179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g02372 1179 MobiDBLite consensus disorder prediction 384 402 - -
Adu09g02372 1179 MobiDBLite consensus disorder prediction 359 383 - -
Adu09g02372 1179 MobiDBLite consensus disorder prediction 191 210 - -
Adu09g02372 1179 MobiDBLite consensus disorder prediction 581 627 - -
Adu09g02372 1179 Pfam PPR repeat 1131 1163 IPR002885 -
Adu09g02372 1179 Pfam PPR repeat 1027 1057 IPR002885 -
Adu09g02372 1179 MobiDBLite consensus disorder prediction 405 438 - -
Adu09g02372 1179 MobiDBLite consensus disorder prediction 474 498 - -
Adu09g02372 1179 MobiDBLite consensus disorder prediction 113 148 - -
Adu09g02372 1179 MobiDBLite consensus disorder prediction 524 545 - -
Adu09g02372 1179 Pfam PPR repeat family 961 1007 IPR002885 -
Adu09g02372 1179 Pfam PPR repeat family 1065 1114 IPR002885 -
Adu09g02372 1179 MobiDBLite consensus disorder prediction 31 50 - -
Adu09g02372 1179 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1031 1065 IPR002885 -
Adu09g02372 1179 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 996 1030 IPR002885 -
Adu09g02372 1179 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 703 1178 - -
Adu09g02372 1179 MobiDBLite consensus disorder prediction 1 16 - -
Adu09g02372 1179 MobiDBLite consensus disorder prediction 218 505 - -
Adu09g02372 1179 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 856 890 IPR002885 -
Adu09g02372 1179 MobiDBLite consensus disorder prediction 642 661 - -
Adu09g02372 1179 MobiDBLite consensus disorder prediction 318 348 - -
Adu09g02372 1179 PANTHER OS10G0506000 PROTEIN 703 1178 - -
Adu09g02372 1179 Gene3D Tetratricopeptide repeat domain 1097 1168 IPR011990 GO:0005515
Adu09g02372 1179 Gene3D Tetratricopeptide repeat domain 1018 1096 IPR011990 GO:0005515
Adu09g02372 1179 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1136 1166 IPR002885 -
Adu09g02372 1179 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 961 995 IPR002885 -
Adu09g02372 1179 TIGRFAM PPR: pentatricopeptide repeat domain 1068 1102 IPR002885 -
Adu09g02372 1179 TIGRFAM PPR: pentatricopeptide repeat domain 1035 1067 IPR002885 -
Adu09g02372 1179 TIGRFAM PPR: pentatricopeptide repeat domain 1103 1136 IPR002885 -
Adu09g02372 1179 TIGRFAM PPR: pentatricopeptide repeat domain 1138 1166 IPR002885 -
Adu09g02372 1179 TIGRFAM PPR: pentatricopeptide repeat domain 998 1032 IPR002885 -
Adu09g02372 1179 MobiDBLite consensus disorder prediction 581 614 - -
Adu09g02372 1179 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1066 1100 IPR002885 -
Adu09g02372 1179 Gene3D Tetratricopeptide repeat domain 807 981 IPR011990 GO:0005515
Adu09g02372 1179 MobiDBLite consensus disorder prediction 59 103 - -
Adu09g02372 1179 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1101 1135 IPR002885 -
Adu09g02372 1179 MobiDBLite consensus disorder prediction 1 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g02372 Adu-Chr9 111043824 111049870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g02372 853 1166 Glycosyltransferase AT1G05670 26.115 1.09e-26 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g02372 - - adu:107466922 1274.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu09g02372 09 111043824 111049870 Adu09g02372 09 111043824 111049870 ECH