LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu09g00460	ATGTCAGAATCGGAGCCCGGATGGATTTGGTGGCCCGCATCACTAAAAACCTATAGCTCTCGAGAAGGTTATCGTTGGCTCCTGACAAAGAAAGTGAATTCGATCGAAAATAGCAACTATCTGGAAACAATGGAGTATTGTCTTAGGGATTGTGAGAAATCAAGATGCATTTGGCAAATGTTGGATCCTTTGCTTATTGATTCATTTGAAGGTACTCCCTTGGAATTTTGGATTCGGAAGGTCATGCCGGGCAATGAGGCAATTGTAGGGGCGGGTCTTTGGTGGGTGTGGAGGCATCGTTACAATGATATTTTCAATAATGGAGATCAGTGGTCAAACTATAAGGTTGTTGCTATGGCTTGGATTACTACTAATGATTTAAGAAAGTCTGCCAGTACCAAGTGTATAACTTTCAAGGATCGAAGGAGGTGGAAAcctccaacagACACCGCAATTTCTCTGAGATCGAGCTTAACGTTCGGTGAAACACTCTGTGCGGTGTGCATTCCGCTTATCGGAATCGTTGAAGCTCTCTTCGTCAGCTTAGCTGGTTGCTTCGATTTCCATGGCGACAAGCAAAGCAAGAAAAACCAGATCCCTAGCTCTTTTGATGACATCCTTCGCCTCGCCAAGGATTCTCCATTTACGGTTAATGAAATTGAGGCGCTGCGTGAGTTGTTCAAGAAGTTGAGTAGCTCAATTATTGATGATGGACTTATTCACAAGGAAGAGCTGCAATTGGCACTATTGAAGACCCCAGTTGGCGAGAATCTTTTCCTTGATAGGGTGTTTGATCTCTTCGATGAAAAAAGAAATGGTGTTATAGAATTTGAGGAATTTGTGCATGCTCTCAGTATCTTTCATCCATATGCTTCTTTAGAAAAGAAAATTGATTTTGCTTTTAGATTGTATGACCTGAGACAAACTGGATATATCGAACGGGAAGAAGTTAGGCAAATGGTGGTTGCGATAATGTCTGAATGTGACATGCATTTGGAAGATGAAGTTCTTGAAAGCATTATTGATAAGACATTTCAAGATGCTGATACTGACAATGATGGTAAGATAAGCAAAGAAGAATGGAGGGAATATGTTCTTCGGCACCCGTCCCTATTGAAGCACATGACTCTTCCTTACCTCAAGGACGTAACCACGGTATTTACCAGCTTCATTTTCAACACTGAAGTTGATGATTCCCACTGGCAGAGAGTGCAAAACATTTATTTGTACAGTACAAAAGAGGCGACCAAGTTGATTGGAAGGATAATGTAA	1272	0.4112	MSESEPGWIWWPASLKTYSSREGYRWLLTKKVNSIENSNYLETMEYCLRDCEKSRCIWQMLDPLLIDSFEGTPLEFWIRKVMPGNEAIVGAGLWWVWRHRYNDIFNNGDQWSNYKVVAMAWITTNDLRKSASTKCITFKDRRRWKPPTDTAISLRSSLTFGETLCAVCIPLIGIVEALFVSLAGCFDFHGDKQSKKNQIPSSFDDILRLAKDSPFTVNEIEALRELFKKLSSSIIDDGLIHKEELQLALLKTPVGENLFLDRVFDLFDEKRNGVIEFEEFVHALSIFHPYASLEKKIDFAFRLYDLRQTGYIEREEVRQMVVAIMSECDMHLEDEVLESIIDKTFQDADTDNDGKISKEEWREYVLRHPSLLKHMTLPYLKDVTTVFTSFIFNTEVDDSHWQRVQNIYLYSTKEATKLIGRIM	423

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu09g00460	423	PRINTS	Recoverin family signature	356	376	-	-
	Adu09g00460	423	PRINTS	Recoverin family signature	310	328	-	-
	Adu09g00460	423	PRINTS	Recoverin family signature	263	284	-	-
	Adu09g00460	423	ProSiteProfiles	EF-hand calcium-binding domain profile.	292	327	IPR002048	GO:0005509
	Adu09g00460	423	Pfam	EF-hand domain pair	237	281	IPR002048	GO:0005509
	Adu09g00460	423	ProSiteProfiles	EF-hand calcium-binding domain profile.	336	371	IPR002048	GO:0005509
	Adu09g00460	423	ProSitePatterns	EF-hand calcium-binding domain.	349	361	IPR018247	-
	Adu09g00460	423	SUPERFAMILY	EF-hand	209	389	IPR011992	-
	Adu09g00460	423	ProSiteProfiles	EF-hand calcium-binding domain profile.	255	290	IPR002048	GO:0005509
	Adu09g00460	423	PANTHER	EF HAND CALCIUM-BINDING FAMILY PROTEIN	149	398	-	-
	Adu09g00460	423	CDD	EFh	296	363	IPR002048	GO:0005509
	Adu09g00460	423	Gene3D	-	207	399	-	-
	Adu09g00460	423	PANTHER	CALCINEURIN B	149	398	IPR045198	GO:0005509\|GO:0019722\|GO:0019900
	Adu09g00460	423	Pfam	EF-hand domain pair	295	364	IPR002048	GO:0005509
	Adu09g00460	423	SMART	efh_1	340	368	IPR002048	GO:0005509
	Adu09g00460	423	SMART	efh_1	259	287	IPR002048	GO:0005509
	Adu09g00460	423	SMART	efh_1	296	324	IPR002048	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu09g00460	Adu-Chr9	5437530	5445647	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu09g00460	175	399	EF-hand Containing Proteins	AT5G55990	60.000	7.04e-90	270

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu09g00460	K06268		-	gmx:100306023	405.601