Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g00454 ATGGCTCACCAACCTTTTGACCCATACTACGCATACCAGCAGCAGGATGAGCGAAGCCACATCAACACGTTGTTTGTGTCGGGCCTCCCAGACGACGTGAAGGCGCGTGAGATTCACAATCTCTTCCGCCGTCGCCCCGGCTTCGACTCCTGCCAGCTTAAGTACACCGGACGCGCCAACCAGGTTGTTGCGTTTGCTACTTTTTTCAATCATCAATCGGCGATGGCAGCATTGCACGCTTTAAATGGCGTGAAATTTGATCCACAAGCTGGTTCTGTTTTGCATATTGAACTTGCTAGGTCAAACTCAAGGAGGAAGCGTAAGCCAGGTAGCGGAGCCTATGTTGTTATAGATAAACGGTCTAAAGGAGAGGCTGATGTGCAAGGGTCATCAAGTGATGATGGTGACAGTGATCCTGATGAACCATCAGGAAGTGGTGGCAGCCATGGTGATTTAGCAACCACTAAAAGGTCAAAAGTACAGTTTACTACAAGTCACTATTTCGAGCAGCATGAAAGGGGTCCTGATGGAGGACCATGCTCTACTCTCTTCATTGCAAATCTTGGTCCAAACTGCACTGAAGATGAACTGAGACAAACTTTCTCAGAAGTTGAACAAGCTACTAAGGTCATGGAGCAGCTTCAGGGCAGCATGCTGTCATCGTCAGATCGGGGTGGCATGCACATAGAATACGCAAGGTCTAAAATGAGGAAGCATTAG 720 0.4833 MAHQPFDPYYAYQQQDERSHINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRANQVVAFATFFNHQSAMAALHALNGVKFDPQAGSVLHIELARSNSRRKRKPGSGAYVVIDKRSKGEADVQGSSSDDGDSDPDEPSGSGGSHGDLATTKRSKVQFTTSHYFEQHERGPDGGPCSTLFIANLGPNCTEDELRQTFSEVEQATKVMEQLQGSMLSSSDRGGMHIEYARSKMRKH 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g00454 239 MobiDBLite consensus disorder prediction 102 156 - -
Adu09g00454 239 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 8 205 - -
Adu09g00454 239 SUPERFAMILY RNA-binding domain, RBD 22 219 IPR035979 GO:0003676
Adu09g00454 239 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 22 101 IPR000504 GO:0003723
Adu09g00454 239 SMART rrm1_1 23 97 IPR000504 GO:0003723
Adu09g00454 239 SMART rrm1_1 182 230 IPR000504 GO:0003723
Adu09g00454 239 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 24 87 IPR000504 GO:0003723
Adu09g00454 239 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 207 IPR000504 GO:0003723
Adu09g00454 239 Gene3D - 17 104 IPR012677 -
Adu09g00454 239 PANTHER RNA-BINDING PROTEIN-RELATED 8 205 - -
Adu09g00454 239 CDD RRM_RBPMS_like 22 97 - -
Adu09g00454 239 Gene3D - 120 211 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g00454 Adu-Chr9 5339690 5342758 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g00454 - - gmx:100810989 356.295
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu09g00454 09 5339690 5342758 Adu09g00454 09 5339690 5342758 ECH