Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02879 ATGACACCCTCGAAATGGTTCACCCCTTTGGTTCAAAGGAGTGTGAACAAGTTGGTTTATGTACCCATGTCTACGTCGAATTGCAAAGCCCAGTTCCACAATATTCTCAAGCCACCAAAGCCAAACCAGACCCTTAAGAAGTACCTTGATGGCAACAACCCCACCAAAGTGCTGCTACACTTCAGATATTTGATGAGAGAAAGAACCACTTTCAACTCAATAGACAGCTTCACTTTCCTGTTTGCCCTCAAAGCCTGCAACAAGAAACATTCCTCAATCCATGGAAAACAATTGCATGGTCTCATCACAAAATTTGGATACAAAGACATAGTCCAACTCCAGACATCACTTCTGAAAGTGTATGCTGAAGGGGGAAACCTGTGCAGTGCCCACCAAGTATTTGATGAAATGCCCACTAAGAACATTATATGTTGGACCTCTTTGATTTCTGCATATGTTGACAATCATAAACCCAACAAAGCCTTAGAGACGTTCAGGATGATGCAGATGGACAATGTCGAACCTGATCAAGTCACAGTAACAGTTGCTCTCTCCGCATGTGCTGATACTGGGGCACTGGAACTGGGTAATTCGATTCATAATTTCATCCGGCGCAATGGAGGACTGAAAATAGATTTGTGCTTGAATAATGCTCTCATTAACATGTATGCTAAATGTGGGGATATCACTACAGCAAGGAGATTGTTTGACAGCACAAAGATCAAAGATGTCACAACTTGGACGTCCATGATTGTGGGGCATGCGCTGCATGGTCAAGCATATGAAGCTCTTGAGCTTTTCTCAGAAATGAACACGGGCTTCAACATAGTCCCAAACGATGTAACCTTCATAGGAGTTTTAATGGCTTGCAGCCATGCAGGATTGGTTGAGGAAGGGAAGCAACATTTCAGAAGTATGACCGAGGATTACGGCATTCGGCCTAGAGAGGCCCACTTTGGCTGCATGGTGGATCTTTTATGTAGAGGTGGTTGTCTAAAAGACGCATATTACTTTATTATGGAGATGCCGGTGCAGTCTAATGCAGTCATTTGGCGAACCTTGCTGGGGGCTTGCAGCCTCCATGGTGAACTGGAGCTAGCTGCAGAAGCTCGGGAGAAACTGCTCAAGTTGGACCCTGACTATGTGGGTGATAGTGTTGCTTTGTCCAATATTTATGCAGATAAAAGGATGTGGAATAACAAGATGATTGCTAGGAATCAGATCAAACAATCAAGAGCTCCTGGTTGCAGTTCCATTGAGGTGACAAGTGGAGTTGGTGAATTTGTAATTGTCAATAATCCTTAG 1305 0.4383 MTPSKWFTPLVQRSVNKLVYVPMSTSNCKAQFHNILKPPKPNQTLKKYLDGNNPTKVLLHFRYLMRERTTFNSIDSFTFLFALKACNKKHSSIHGKQLHGLITKFGYKDIVQLQTSLLKVYAEGGNLCSAHQVFDEMPTKNIICWTSLISAYVDNHKPNKALETFRMMQMDNVEPDQVTVTVALSACADTGALELGNSIHNFIRRNGGLKIDLCLNNALINMYAKCGDITTARRLFDSTKIKDVTTWTSMIVGHALHGQAYEALELFSEMNTGFNIVPNDVTFIGVLMACSHAGLVEEGKQHFRSMTEDYGIRPREAHFGCMVDLLCRGGCLKDAYYFIMEMPVQSNAVIWRTLLGACSLHGELELAAEAREKLLKLDPDYVGDSVALSNIYADKRMWNNKMIARNQIKQSRAPGCSSIEVTSGVGEFVIVNNP 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02879 434 Pfam PPR repeat 281 308 IPR002885 -
Adu08g02879 434 Pfam PPR repeat 217 238 IPR002885 -
Adu08g02879 434 Pfam PPR repeat 246 270 IPR002885 -
Adu08g02879 434 Pfam PPR repeat 319 342 IPR002885 -
Adu08g02879 434 Pfam PPR repeat family 140 188 IPR002885 -
Adu08g02879 434 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 273 IPR002885 -
Adu08g02879 434 Gene3D Tetratricopeptide repeat domain 217 423 IPR011990 GO:0005515
Adu08g02879 434 Gene3D Tetratricopeptide repeat domain 40 209 IPR011990 GO:0005515
Adu08g02879 434 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 141 175 IPR002885 -
Adu08g02879 434 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 111 431 - -
Adu08g02879 434 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 32 165 - -
Adu08g02879 434 TIGRFAM PPR: pentatricopeptide repeat domain 143 176 IPR002885 -
Adu08g02879 434 TIGRFAM PPR: pentatricopeptide repeat domain 246 279 IPR002885 -
Adu08g02879 434 Pfam E motif 361 420 IPR046848 -
Adu08g02879 434 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 111 431 - -
Adu08g02879 434 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 32 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02879 Adu-Chr8 45262659 45264051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02879 77 430 Glycoside Hydrolase AT3G49170 36.695 1.09e-72 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02879 - - lang:109327537 645.195