Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02490 ATGACTCCGTGGAAAGCATACATGCTTAGATTTCTCAACTCATTGCCATTTGGATCAATCGATCGAGTATGTGCACGGCCTGATATTGATGATTTCTACTGGGAGAAGATTTCAACACCCATTCTTGACACAATTGAAAATCCTATTTGCTTGAAAAACTTATCTCTTAAGGAACTGAAACAACTAGCTGGGGAGCTCCGTCTGGAGTTGTCTTCAATTATGTCGAGTACACAAATACCATTGAGTGCAAGCATAGCTGCAGTGGAGCTGACGATTGCAATGCACCATGTTTTTCATGCTCCAGTAGACAAGATATTATGGGATGTCGGCGAACAAACGTATGCACATAAGATTCTTACAGGAAGACGATCTCTCATGTACACAATGAGACAAAAGAATGGTATCTCTGGTTTTACTTCTCGATTTGAGAGTGAATATGATGCATTTGGTGCAGGTCATGGATGCAACAGTATTTCTGCTGGACTAGGCATGGCTGTTGCACGAGATATGAAGGGGAGGCGAGAACGCATAGTAACAGTAATCAGCAATTTGACAACAATGGCCGGTCAAGTGTACGAGGCAATGAGCAATGCAGGATATTTGGACTCAAATTTGGTGGTAGTTTTGAATGACAGCCGGCATTCCCTACTCCCTAAAGTTGATGAGGGCCCAAAGACATCCATCAATGCCCTCTCTAGTACCTTGAGCAAGCTCCAGTCCAGTAAATCTTTCCGAAGATTTAGAGAAGCTGCTAAGGGTGTCACAAAACGAATTGGTAGAGGTATGCATGAATGGGCAGCAAAAGTTGACGAATATGCCCGTGGGTTGATTGGCCCATTAGGTTCTACTCTCTTTGACGAGCTTGGTCTGTACTACATAGGCCCAGTGGATGGTAATAATATTGAAGATCTAGTTTGTGTTCTGCAAGAAGTTGCTTCGCTCGATTCAATGGGTCCTGTCTTGGTTCATGTTATAACTGATGATAATCAGGGAGTAGAAAACAATAAAAGAAGTGATATAACCGACGGGCAGGAAGATGGTTCTATAAAATCAAATTTTTTACATTATGATGTTCGGCAACGGACATATGGGGATTGCTTTGTGGAGACTTTGGTTTCAGAAGCCGAGAAAGACAAAGATATTGTAGTTGTTAATACAGGAACCATGATGGAGCCATCACTAGAGCTGTTTCGGGAAAAATTTCCTGATAGGTTTTTTGATGTGGGAATGGCCGAGCAACATGCAGTCACCTTTGCTTCTGGCTTGTCATGTGGTGGATTGAAGCCTTTCTGTGTTATACCTTCTTCCTTTCTACAAAGGGCATATGACCAGGTTGTCCATGATGTAGATCAACAGAAAATTCCGGTACGCTTTGTCATCACAAGTGCAGGATTGGTGGGCTCTGATGGTCCTCTCCAATGTGGGGCATTTGACATAACCTTTATGTCATGCTTACCGAACATGATTGTTATGGCACCGTCTGATGAAATCGAACTCGTGCACATGGTGGCTACTGCTATTCATGTCAATGATCGGCCGATTTGCTTTCGGTATCCCAGGGGTGCTCTTGTTGGGAGAGACCAAACTATATGTGATGGAGTCCCCATTGAGATTGGAGAAGGAAGAGTTCTTGTTGAAGGTAAAGATGTTGCTTTACTGGGATATGGATCAATGGTTCAGAACTGCCTTAAGGCTCATACACTTCTTGCAAAGCTTGGCATTGAGGTCACTGTTGCTGATGCAAGGTTTTGCAAGCCCCTTGACATCAAGCTTCTGAGGCAGCTCTGTAAGCATCATTCATTCCTGATTACTGTCGAGGAAGGATCTATTGGAGGATTCGGTTCTCATGTTGCACAGTTCATTGCACTTGATGGACTGCTTGATGGAAGCATTAAGTGGCGACCAATAGTCTTACCGGATAGTTACATTGAGCATGCATCACCAAACGAGCAGCTTCAGCAGGCGGGGTTAACCGGACATCACATTGCCGCCACAACATTGAGTCTGCTTGGCCGTACCCGCGAAGCTCTCCAATTCATGTGTTCTTGA 2049 0.4397 MTPWKAYMLRFLNSLPFGSIDRVCARPDIDDFYWEKISTPILDTIENPICLKNLSLKELKQLAGELRLELSSIMSSTQIPLSASIAAVELTIAMHHVFHAPVDKILWDVGEQTYAHKILTGRRSLMYTMRQKNGISGFTSRFESEYDAFGAGHGCNSISAGLGMAVARDMKGRRERIVTVISNLTTMAGQVYEAMSNAGYLDSNLVVVLNDSRHSLLPKVDEGPKTSINALSSTLSKLQSSKSFRRFREAAKGVTKRIGRGMHEWAAKVDEYARGLIGPLGSTLFDELGLYYIGPVDGNNIEDLVCVLQEVASLDSMGPVLVHVITDDNQGVENNKRSDITDGQEDGSIKSNFLHYDVRQRTYGDCFVETLVSEAEKDKDIVVVNTGTMMEPSLELFREKFPDRFFDVGMAEQHAVTFASGLSCGGLKPFCVIPSSFLQRAYDQVVHDVDQQKIPVRFVITSAGLVGSDGPLQCGAFDITFMSCLPNMIVMAPSDEIELVHMVATAIHVNDRPICFRYPRGALVGRDQTICDGVPIEIGEGRVLVEGKDVALLGYGSMVQNCLKAHTLLAKLGIEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAQFIALDGLLDGSIKWRPIVLPDSYIEHASPNEQLQQAGLTGHHIAATTLSLLGRTREALQFMCS 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02490 682 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 39 422 IPR029061 -
Adu08g02490 682 Pfam Transketolase, pyrimidine binding domain 362 523 IPR005475 -
Adu08g02490 682 SUPERFAMILY TK C-terminal domain-like 534 670 IPR009014 GO:0003824
Adu08g02490 682 Gene3D - 539 670 IPR009014 GO:0003824
Adu08g02490 682 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-LIKE PROTEIN 20 681 - -
Adu08g02490 682 Gene3D - 361 532 - -
Adu08g02490 682 SMART Transket_pyr_3 361 526 IPR005475 -
Adu08g02490 682 CDD TPP_DXS 81 331 IPR005477 GO:0008661|GO:0016114
Adu08g02490 682 Pfam Transketolase, C-terminal domain 539 662 IPR033248 -
Adu08g02490 682 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 41 671 IPR005477 GO:0008661|GO:0016114
Adu08g02490 682 CDD TPP_PYR_DXS_TK_like 367 520 - -
Adu08g02490 682 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 44 668 IPR005477 GO:0008661|GO:0016114
Adu08g02490 682 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 20 681 IPR005477 GO:0008661|GO:0016114
Adu08g02490 682 Gene3D - 34 335 - -
Adu08g02490 682 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 42 326 IPR005477 GO:0008661|GO:0016114
Adu08g02490 682 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 361 549 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02490 Adu-Chr8 40861211 40867898 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02490 399 621 Acyl Lipid Metabolism Gene Families AT1G55510 24.691 2.59e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02490 K01662 - gmx:100787937 1129.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g02490 08 40861211 40867898 Adu08g02490 08 40861211 40867898 ECH