Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02427 ATGGCCGTTCCCTTTTTCAAAACAACATTTGTTCCATCTCTTTCCGCAAAAACCACCACTCGCATCACTCCTTCAAAGTCCACAATACCCTTCATTCGCTTCCTCACATTCTCAACAATGAACTCATCTCCATCACCGTCATCACCATCGATCTACCACGTGCCAGACCTAGGTGCCAACGATATGGACCGCGTGGCAGACCACACTTTCCGAACCTACAATGCAAATGTGGCCAAGAGAAGTGGTAAAGGGACGGCAATTGTGTGGTTCAGAAATGATCTGAGGGTGTTAGACAATGAAGTTCTCTACAAAGCGTGGCTCTCTTCGGAAACTCTCTTACCCGTTTTCTGTGTTGATCCTCGCCTCTTTTCCACCACTTACCATTTTGGTTTTCCCAAAACTGGAGCATTGAGAGCTCAATTTTTCGTCGAATGCTTGGCCGACCTGAGGAAGAACTTGACAAAATTTGGACTTAATTTGCTTATACAACACGGAAAGCCTGAAGATATTCTTCCTTCTCTAGCTAAAGCTTTCAAAGCTCATACAGTGTATGCCCAGAAAGAAACCTGCAGTGAGGAGCTGAATGTTGAAAGATTAGTCAGCAAAGGTCTTCGACAAGTAGCAATGCCATCCGGGGAATCCAGTAGTTCAACGAATTCAAACAACTTCCCCAAGTTACAATTGATTTGGGGTACCACCTTGTACCACATAGACGACCTTCCTTTTGATGCCGGTAGTTTGCCAGACACTGTCGAGGCGAAGTGTTCGATACGTCCGTGCATCAAACTTCCTGTGTTGCTTGGACCTCCTCCACTTGTTGAGGATTGGGGGTGTGTTCCTTCATTAGAGAAGCTGGGACTTAGCTCACAGAATGTTAGCAAGGGGATGAAATTTGTAGGAGGTGAAACTGCGGCGTTGAGCAGAGTATATGAATACTTTTGGAAGAAGGATTTGCTAAAGGTATATAAAGAGACCAGAAATGGAATGTTAGGACCTGATTACTCCACTAAGTTCTCACCATGGCTTGCATTTGGAAGCTTGTCTCCTCGTTTAATACATGAAGAGGTGAAGAGATATGAGAATGAAAGGATAGCAAATGGTTCTACATACTGGGTCTTGTTCGAGTTGATATGGAGGGATTACTTCCGGTTTTTATCGGTGAAATATGGGAATTCAATTTTCTATTTAGGTAATTTGCTGAAGCATGGAGAGACGGCCGTACCGGGTACAGCTTCTATCGACACAATATATCCTTTGATTGATGCCAATATGAAAGAACTATCAACAACAGGGTTTATGTCAAACCGAGGACGGCAGATTGTGTGTTCATTTCTTGTTCGTGATATGGGCATAGATTGGCGAATGGGAGCAGAGTGGTTCGAGACGTGTCTTCTAGATTATGATCCATGTTCTAATTATGGAAACTGGACTTATGGTTCAGGAGTTGGGAATGATCCAAGAGAAGATCGATATTTCAGCATTCCGAAACAAGCACAAACATATGATCCGGAAGGAGAATACGTTGCATACTGGTTGCCACGATTACAAACAATTCCGAAAGAGAAAAGGAACTTTCCTGGAAATTTATACATCCGTCAAATTGTGCCTCTCAAGTATGGTAGACTCCAGAATGACGGCGCAAGAAGCAGCAATGATAGAAGGAATGACAGAAGATGGAACAGGAACTAA 1689 0.4346 MAVPFFKTTFVPSLSAKTTTRITPSKSTIPFIRFLTFSTMNSSPSPSSPSIYHVPDLGANDMDRVADHTFRTYNANVAKRSGKGTAIVWFRNDLRVLDNEVLYKAWLSSETLLPVFCVDPRLFSTTYHFGFPKTGALRAQFFVECLADLRKNLTKFGLNLLIQHGKPEDILPSLAKAFKAHTVYAQKETCSEELNVERLVSKGLRQVAMPSGESSSSTNSNNFPKLQLIWGTTLYHIDDLPFDAGSLPDTVEAKCSIRPCIKLPVLLGPPPLVEDWGCVPSLEKLGLSSQNVSKGMKFVGGETAALSRVYEYFWKKDLLKVYKETRNGMLGPDYSTKFSPWLAFGSLSPRLIHEEVKRYENERIANGSTYWVLFELIWRDYFRFLSVKYGNSIFYLGNLLKHGETAVPGTASIDTIYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPRLQTIPKEKRNFPGNLYIRQIVPLKYGRLQNDGARSSNDRRNDRRWNRN 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02427 562 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 404 543 - -
Adu08g02427 562 TIGRFAM crypto_DASH: cryptochrome, DASH family 85 514 IPR014133 GO:0003913|GO:0006281
Adu08g02427 562 MobiDBLite consensus disorder prediction 543 562 - -
Adu08g02427 562 Gene3D HUPs 49 231 IPR014729 -
Adu08g02427 562 MobiDBLite consensus disorder prediction 547 562 - -
Adu08g02427 562 PANTHER CRYPTOCHROME DASH 72 539 - -
Adu08g02427 562 Gene3D - 232 394 - -
Adu08g02427 562 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 296 528 IPR036134 -
Adu08g02427 562 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 83 275 IPR036155 -
Adu08g02427 562 Pfam DNA photolyase 86 251 IPR006050 -
Adu08g02427 562 Pfam FAD binding domain of DNA photolyase 415 523 IPR005101 -
Adu08g02427 562 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 84 217 IPR006050 -
Adu08g02427 562 PANTHER CRYPTOCHROME 72 539 IPR002081 -
Adu08g02427 562 PRINTS DNA photolyase signature 435 453 IPR002081 -
Adu08g02427 562 PRINTS DNA photolyase signature 415 431 IPR002081 -
Adu08g02427 562 PRINTS DNA photolyase signature 474 488 IPR002081 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02427 Adu-Chr8 39960390 39966145 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02427 K25656 - gmx:100783312 830.476