Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01098 ATGAAAATGGAAAACAAGTTACCAATGATACTTGTGGCCATGGCACTTGTCATGATTGCGAGTGTTAGTGCTCAAAATTGTGGATGTGCATCGGACTTGTGTTGTAGCAAGTACGGATACTGTGGCACCGGCGACGATTATTGCGGCGACGGATGTCAACAGGGTCCTTGCTATAGCTCACCAAGCACTCCGAGCACTCCTAGCTCCGGCAGCGGTAGTGTTAACGTCGCCGACGTAGTCACACAAGATTTCTTCAATTCTATAATCAGCCAAGCTGCTGCTAATTGTGAAGGCAAAAATTTTTACACTCGCGACGCTTTTCTTAGCGCTCTCAATTCCTACAGTACTTTTGGTCAGCTGAGCTCAACCGACGACTCTAAGCGCGAAATTGCAGCTGCCTTTGCTCATTTTACACACGAAACTGGCTACTTTTGTTATATTAATGAGCAAAATGGTGCATCACACAACTATTGTGACTCAAGCTACACACAATATCCATGCAACCCTAACAAGCAATACTTTGGTCGTGGACCTCTCCAACTAACATGGAACTACAACTACGGAGCGGCCGGAAACGCGAACAATTTCGACGGATTGAATGCGCCGGAGACGGTGGGGAATGATGCCGTGGTGTCATTCAAGGCGGCGTTGTGGTTTTGGATGACCAATGTAAGGCCAGTTGAGAGCCAGGGGTTTGGTGCAACCATTAGGGCCATTAATAGTGGTGAATGCAATGGTGGTAACACTTCGGAGATGAACGATCGTGTGAACCTATACAAACAATACTGTCAAGATTTTGGTGTTGCTCCTGGTGATAATCTTACTTGCTAA 831 0.4645 MKMENKLPMILVAMALVMIASVSAQNCGCASDLCCSKYGYCGTGDDYCGDGCQQGPCYSSPSTPSTPSSGSGSVNVADVVTQDFFNSIISQAAANCEGKNFYTRDAFLSALNSYSTFGQLSSTDDSKREIAAAFAHFTHETGYFCYINEQNGASHNYCDSSYTQYPCNPNKQYFGRGPLQLTWNYNYGAAGNANNFDGLNAPETVGNDAVVSFKAALWFWMTNVRPVESQGFGATIRAINSGECNGGNTSEMNDRVNLYKQYCQDFGVAPGDNLTC 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01098 276 CDD ChtBD1 29 53 - -
Adu08g01098 276 ProSitePatterns Chitinases family 19 signature 2. 211 221 IPR000726 GO:0004568|GO:0006032|GO:0016998
Adu08g01098 276 ProSitePatterns Chitinases family 19 signature 1. 96 118 IPR000726 GO:0004568|GO:0006032|GO:0016998
Adu08g01098 276 Gene3D - 21 59 IPR036861 GO:0008061
Adu08g01098 276 Pfam Chitin recognition protein 24 57 IPR001002 GO:0008061
Adu08g01098 276 CDD chitinase_GH19 80 276 - -
Adu08g01098 276 PANTHER ENDOCHITINASE EP3-LIKE 6 276 - -
Adu08g01098 276 Gene3D - 74 276 - -
Adu08g01098 276 PIRSF Endochitinase 1 276 IPR016283 GO:0004568|GO:0005975
Adu08g01098 276 ProSiteProfiles Chitin-binding type-1 domain profile. 24 59 IPR001002 GO:0008061
Adu08g01098 276 SUPERFAMILY Lysozyme-like 75 276 IPR023346 -
Adu08g01098 276 PRINTS Chitin-binding domain signature 27 35 IPR001002 GO:0008061
Adu08g01098 276 PRINTS Chitin-binding domain signature 35 42 IPR001002 GO:0008061
Adu08g01098 276 PRINTS Chitin-binding domain signature 42 49 IPR001002 GO:0008061
Adu08g01098 276 Gene3D Endochitinase, domain 2 150 206 - -
Adu08g01098 276 Pfam Chitinase class I 79 226 IPR000726 GO:0004568|GO:0006032|GO:0016998
Adu08g01098 276 Pfam Chitinase class I 230 276 IPR000726 GO:0004568|GO:0006032|GO:0016998
Adu08g01098 276 ProSitePatterns Chitin recognition or binding domain signature. 29 48 IPR018371 GO:0008061
Adu08g01098 276 PANTHER CHITINASE-RELATED 6 276 - -
Adu08g01098 276 SUPERFAMILY Plant lectins/antimicrobial peptides 22 63 IPR036861 GO:0008061
Adu08g01098 276 SMART ChitinBD_3 26 57 IPR001002 GO:0008061
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01098 Adu-Chr8 19838069 19839314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01098 11 276 Glycoside Hydrolase AT3G54420 62.222 3.95e-123 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01098 K01183 - pop:7467474 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g01098 08 19838069 19839314 Adu08g01098 08 19838069 19839314 ECH
Adu08g01098 08 19838069 19839314 Adu03g00406 03 3776351 3778460 PCT