Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00869 ATGGGTGGCACTGGCACCGTTGTTTCTCAGTTCCTCAATCTATCATCATCTTCTTCTTCTTATTCTCCACGCTTCCTTGCTCCTTCACTGTCGTGTGCTGCTTCAACCCTCCTTCATTCTCGCTTCTCACTCCCTTCTATCCGCTCTTGCACTTCCTCTGCCACCGCCACACCTTCTACTTCTTCAGACACGATCACTCCTCCAACCCCTCTCAAGAAACGGGTAGTCTCGGGAGTGCAGCCAACTGGGTCAATTCACCTTGGAAACTATTTTGGAGCCATCAAGAATTGGGTTGCACTTCAGAATACATATGATACACTTTTCTTCATTGTAGACCTCCACGCGATTACATTACCTTATGAAGCACAACAATTATCTAAGGCTTCAAGGTCAACTGCAGCTATTTATCTGGCATGTGGAGTGGATCCTTCTAAGGCTTCTGTTTTTGTACAGTCTCATGTTCGGGCACATGTAGAATTAATGTGGTTGCTAAGTTCTGCAACACCAATTGGTTGGCTGAACAAAATGATACAGTTCAAAGAGAAATCTCGCAAGGCGGGTGATGAAGAAGTTGGAGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGTCTGATTTTGTCCCTGTTGGTGAAGATCAAAAGCAGCACTTGGAGTTGACTCGTGACTTAGCAGAACGGGTTCCGGAGCCTCTTATACCTCCAGCTGGAGCCCGAATTATGTCCCTAACGGATGGCCTTTCTAAGATGTCAAAGTCCACACCTTCTGATCAATCGAGAATCAATTTGCTTGATCCTAAAGATCTTATAGCAAACAAGATCAAACGTTGCAAAACTGATGCATTTCCAGGATTGGAGTTTGATAATCCTGAGAGGCCAGAATGTAACAATCTTCTTTCCATATACCAGCTCATTTCGGGAAAGACAAAAGAGGAAGTTGTTCAGGAGTGCCAAAACATGAACTGGGGCGCCTTCAAAACTCTCTTAACAGATGCCTTGATTGATCATTTGCGTCCAATTCAGGTTCGCTATGACGAAATCATGTCCGATTCTGGTTACTTAGATGATGTTTTAGCAGAAGGTGCTAGAAATGCATCAGAAATAGCAGATGCCACTGTCAATAATGTTTACCAAGCAATGGGATTTTTGGGGAGAAGGTGA 1179 0.4385 MGGTGTVVSQFLNLSSSSSSYSPRFLAPSLSCAASTLLHSRFSLPSIRSCTSSATATPSTSSDTITPPTPLKKRVVSGVQPTGSIHLGNYFGAIKNWVALQNTYDTLFFIVDLHAITLPYEAQQLSKASRSTAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRDLAERVPEPLIPPAGARIMSLTDGLSKMSKSTPSDQSRINLLDPKDLIANKIKRCKTDAFPGLEFDNPERPECNNLLSIYQLISGKTKEEVVQECQNMNWGAFKTLLTDALIDHLRPIQVRYDEIMSDSGYLDDVLAEGARNASEIADATVNNVYQAMGFLGRR 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00869 392 MobiDBLite consensus disorder prediction 52 68 - -
Adu08g00869 392 Pfam tRNA synthetases class I (W and Y) 74 343 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Adu08g00869 392 Hamap Tryptophan--tRNA ligase [trpS]. 72 389 IPR024109 GO:0004830
Adu08g00869 392 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 81 90 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Adu08g00869 392 TIGRFAM trpS: tryptophan--tRNA ligase 72 388 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Adu08g00869 392 CDD TrpRS_core 74 340 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Adu08g00869 392 PRINTS Tryptophanyl-tRNA synthetase signature 85 101 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Adu08g00869 392 PRINTS Tryptophanyl-tRNA synthetase signature 255 265 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Adu08g00869 392 PRINTS Tryptophanyl-tRNA synthetase signature 135 154 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Adu08g00869 392 PRINTS Tryptophanyl-tRNA synthetase signature 212 233 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Adu08g00869 392 SUPERFAMILY Nucleotidylyl transferase 73 388 - -
Adu08g00869 392 Gene3D - 248 358 - -
Adu08g00869 392 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 62 388 - -
Adu08g00869 392 Gene3D HUPs 75 387 IPR014729 -
Adu08g00869 392 MobiDBLite consensus disorder prediction 52 72 - -
Adu08g00869 392 PANTHER BNAA04G15180D PROTEIN 62 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00869 Adu-Chr8 16181028 16186014 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00869 K01867 - gmx:100780447 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00869 08 16181028 16186014 Adu08g00869 08 16181028 16186014 ECH