Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00834 ATGGAAGAGAAGAACTCAATGGGGTATCTTTCATGCATCCGTAACCCTAACGCCTTCCCTGACTCACTCACTAACTCACTAGAACACCACCGCCGTGTCACCACCGCCGTCGCAACTGCTCGGAGCCGCCTTCCCTGTTACGCTCTATTCCAGTATCCGCCACTGCTCAAAGCCGCCGTCTCCACTGCAAATCATCTCGCATCGTTCGTCCGTCGAGCAGCCGATGTTCCGCCGCGTTGGCTCTGTTCAACCACGCTCCAGCCCTTCTCTGCTTCAGTTCGGCCACGCTCAACCCTCCTCTGCTCCATTCCTGCCACGCTCCTCCTTCCTCTGCTCCAGTTCCGTCGCGCACCACCGCCCTCGGCCCCAGTTCCGCAGCGGTCCGGGCCACCTCTTCTCCAGTTCTGCCGCGTCCAGCCTTACGGTGCTCCCTCACCTCTATGCTCTAGAAGAACAAGAATAATGAATCTGTTTCTGAAGAAATGGAACCTGTTCAGCACCTGTTCTTGGGTGGTTCAGAGGGCTATGCTGCACAACTCTCAAGCTCCAAGCGATCACCTTTTCCTTCGAATATCGAGAGCCGGACACCCCAACACTCCCATGAACCATATTCTGGATCAATGGGTCCAAGAGGGCGGACACGTCAGGCATTCCGAGCTCCAGTTCTTCATCAAGCAGCTTAGGTCTCATCGTCGCTTCAACCATGCCCTTCAGGTATTAGAATGGATGGGTGATGAAAGGAAACATCATTTGACATCTGGAGACATAGCTGTACGTCTTGACTTGATAGCAAAAGTTCATGGCTTAGTTCCAGCAGAGAAATACTTTAATAGCCTTTCAGATTCTGTAAAAGATTTCAAGGTCTATGGTGCTCTTTTGAACTGCTATGCACAACATAACTCTGTGGAGAAAGCAGAGGCTACCATGCAGAAACTAAAAGAGTATGCTTGTAAGCATACAATAAGTTTGGTATTGAGTTATAATGCTCTGTTAAAGCTCTATGTTCGAGTAAGTGAATTTGAGAAATTTGACAATTTGATGAGAGAAATGTTATCCAAGGACATGTATGACTCTGTGTCGCTTAATACTCGGCTGGATGCGTATGCGGCCATTAAGGACATAGATGGGATGGAGAGCTTACTATTGCGGATGGAAGCTGATTCTAAGGCAACTATTGATTGGATAACATACTCTATTGCAGCAAAGGCTTATATTCAGGCTGGCCAACATGAGAAAGCATATGCAATGCTGAGGAAATCGGAGGACCTCATTGAACCCAAGAGGAGGAGGGCTGCCTATGAATCTCTTCTAACTATGTACGGCTCCATGGGAAAAAAGGACGATGTTTATCGTATTTGGGATATGTGCAAAAGGTTAAACAGACCCTGCAACACGAATTACATCTGTATGCTGACCGCATTAGCTAGGCTTAATGATGTTGATGGAGCTGAGAGGATTTTTGAGGAATGGGAGTTTGGAAATACATGCTTCGACATCAGGATTCCGAATGTGATGATGAGTGCATATTGTAAGAATGGTCTGGTGGAAAAAGCTGAAGCATTTGTTGATAGGCTTTCAAAGAGTTGCAATGAATTAGGCGGTAGTATATGGGATCGATTAGCAAATGGCTATTACAGGAACAATGATATGGATAATGCTATTCAAACAATGAAGAAAGCGATTTTGGCAGGTCAACCTGGATCAACATGGAAGCCCTATCGATTTACTTTGGCTACATGTATTGATTACCTTAAGGACAAGGGAGATTTGGAGGGGGCATCAGAGATTCTTAGGCTATGTCTTGAACGAGAATATTTTTCTACTGTTATACATGATAGATTATCAAGCTATGTGCATGGAAAAACCCCAGAAACAAAGGCCATAAATCTGATGGAAGAATATTATCATTCAAAGAATGAACTTTTTCCAGATGGAGAGAAGCAACATGAAATTCAACTCCATGAATAG 1968 0.4553 MEEKNSMGYLSCIRNPNAFPDSLTNSLEHHRRVTTAVATARSRLPCYALFQYPPLLKAAVSTANHLASFVRRAADVPPRWLCSTTLQPFSASVRPRSTLLCSIPATLLLPLLQFRRAPPPSAPVPQRSGPPLLQFCRVQPYGAPSPLCSRRTRIMNLFLKKWNLFSTCSWVVQRAMLHNSQAPSDHLFLRISRAGHPNTPMNHILDQWVQEGGHVRHSELQFFIKQLRSHRRFNHALQVLEWMGDERKHHLTSGDIAVRLDLIAKVHGLVPAEKYFNSLSDSVKDFKVYGALLNCYAQHNSVEKAEATMQKLKEYACKHTISLVLSYNALLKLYVRVSEFEKFDNLMREMLSKDMYDSVSLNTRLDAYAAIKDIDGMESLLLRMEADSKATIDWITYSIAAKAYIQAGQHEKAYAMLRKSEDLIEPKRRRAAYESLLTMYGSMGKKDDVYRIWDMCKRLNRPCNTNYICMLTALARLNDVDGAERIFEEWEFGNTCFDIRIPNVMMSAYCKNGLVEKAEAFVDRLSKSCNELGGSIWDRLANGYYRNNDMDNAIQTMKKAILAGQPGSTWKPYRFTLATCIDYLKDKGDLEGASEILRLCLEREYFSTVIHDRLSSYVHGKTPETKAINLMEEYYHSKNELFPDGEKQHEIQLHE 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00834 655 Gene3D Tetratricopeptide repeat domain 189 354 IPR011990 GO:0005515
Adu08g00834 655 TIGRFAM PPR: pentatricopeptide repeat domain 288 317 IPR002885 -
Adu08g00834 655 TIGRFAM PPR: pentatricopeptide repeat domain 326 355 IPR002885 -
Adu08g00834 655 TIGRFAM PPR: pentatricopeptide repeat domain 503 527 IPR002885 -
Adu08g00834 655 Gene3D Tetratricopeptide repeat domain 459 646 IPR011990 GO:0005515
Adu08g00834 655 SUPERFAMILY TPR-like 385 489 IPR011990 GO:0005515
Adu08g00834 655 Pfam PPR repeat 467 490 IPR002885 -
Adu08g00834 655 Pfam PPR repeat 288 314 IPR002885 -
Adu08g00834 655 Pfam PPR repeat 326 354 IPR002885 -
Adu08g00834 655 Pfam PPR repeat 503 526 IPR002885 -
Adu08g00834 655 Pfam PPR repeat 395 419 IPR002885 -
Adu08g00834 655 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 528 IPR002885 -
Adu08g00834 655 PANTHER OS10G0501200 PROTEIN 164 631 - -
Adu08g00834 655 PANTHER OS12G0527900 PROTEIN 164 631 - -
Adu08g00834 655 Gene3D Tetratricopeptide repeat domain 355 458 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00834 Adu-Chr8 15427160 15433216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00834 187 599 EF-hand Containing Proteins AT1G02150 33.014 2.08e-72 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00834 - - ahf:112706297 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00834 08 15427160 15433216 Adu08g00834 08 15427160 15433216 ECH