Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00678 ATGCCTCCTTTGGATTTGAATATTATTATGGATAAAATTCATAGCATGTCGCAAGATGTTGAGAGTGCATTGGAGGCAGAAAATTATGACAGGCTTCTGCAGTCTGGATTACAGATAGCAATTGTTGGCCGTCCAAATGTTGGCAAGTCAAGCCTTCTAAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGCGATGTGATTGAAGCAAGTGTCAGTGTCAATGGTATCCCTATAACCCTTCTTGATACTGCAGGAATCAGGGACACTGATGATGTTGTGGAAAAGATTGGTGTAGAGAGATCAGAAGCTGTTGCTAGGGGTGCTGATCTAATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACTTCTGAAGACACCAAACTTCTAGAAAGGATTCAGTCTGCTAAGAGTTCAACTGGATCCTTGATCCCAGTAATACTTGCGGTCAACAAGATAGATTGCAATCCACGCGCTGAGACAGATTGGGACAGAGGATGTCAGAGTCATGATATCTTCAGTAAACGCGTGTTTACGTGTGCTGTTACTGGTCAAGGATTACAAGACCTAGAGAGGGCAGTACTAGAGCTTGTGGGACTTGATGCCATTCCTTCTGGGGGTCGCCAATGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCTCTTGAAAGGTTACAATCGTCAATAAAGGAGGAACTACCATTAGATTTTTGGACAATTGATTTGAGGGATGCTGCATTATCCCTTGGACAGATAAGTGGAGAAGATATATCTGAAGAAGTATTATCAAATATATTTGGGAAGTTCTGTATTGGTAAATAG 858 0.4242 MPPLDLNIIMDKIHSMSQDVESALEAENYDRLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASVSVNGIPITLLDTAGIRDTDDVVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSAKSSTGSLIPVILAVNKIDCNPRAETDWDRGCQSHDIFSKRVFTCAVTGQGLQDLERAVLELVGLDAIPSGGRQWTVNQRQCEQLVRTKEALERLQSSIKEELPLDFWTIDLRDAALSLGQISGEDISEEVLSNIFGKFCIGK 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00678 285 PANTHER TRNA MODIFICATION GTPASE GTPBP3 1 285 - -
Adu08g00678 285 TIGRFAM small_GTP: small GTP-binding protein domain 37 164 IPR005225 GO:0005525
Adu08g00678 285 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 36 206 IPR031168 -
Adu08g00678 285 PANTHER TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL 1 285 - -
Adu08g00678 285 Pfam 50S ribosome-binding GTPase 38 159 IPR006073 GO:0005525
Adu08g00678 285 Coils Coil 224 244 - -
Adu08g00678 285 PRINTS Transforming protein P21 ras signature 37 58 - -
Adu08g00678 285 PRINTS Transforming protein P21 ras signature 77 99 - -
Adu08g00678 285 PRINTS Transforming protein P21 ras signature 149 162 - -
Adu08g00678 285 SUPERFAMILY TrmE connector domain 7 285 - -
Adu08g00678 285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 204 IPR027417 -
Adu08g00678 285 Pfam MnmE helical domain 7 282 IPR025867 -
Adu08g00678 285 Gene3D tRNA modification GTPase MnmE domain 2 9 285 IPR027368 -
Adu08g00678 285 Gene3D - 37 213 IPR027417 -
Adu08g00678 285 CDD trmE 34 206 IPR031168 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00678 Adu-Chr8 12253745 12256127 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00678 K03650 - gmx:100818096 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00678 08 12253745 12256127 Adu08g00678 08 12253745 12256127 ECH