Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00630 ATGGATATAAACAGAATCCAATTAGCTCTGCGCTCTTGTGGGATCTTTCAATCTATCAAACACGCCAAATCACTTCACTCTTGCATCATAAAACTTGGCTTTCTGAATCATGTTTTCCTCGTAAACAACATGATCTCTGTCTATGCAAAGTGTCTCCATGTATATGATGCGCGAAACCTGTTTGACGAAATGCCTCACAGAAACATCGTTACTTGGACCACAATGCTCTCTGCATACACCAATTCTGGGAGTCCCCACGTGGCCCTTTCGCTTTACAATCAGATGCTGCAATCTGAAACAGAGGAGCCCAATGGGTTCGTGTACTCTGCGGTTCTCAAGGCGTGTGGTCTAGTGGGTGATGTTGAACTGGGTAGGTTTGTTCACCAGCATGTAGCTCAGGCAAAAATGGAATTTGACACTGTTCTGATGAATGCACTTTTGGACATGTATGTCAAATGTGGGAGCTTGAAGGATGCAAAGCGAGTTTTTTATGAGACCCCACTTAAGAATTCGACTTCATGGAACACGCTCATTCTGGGTCATGCTAAAAGTGGCTTGGTGGGCGATGCTCTGAAGCTGTTTGATCAAATGCCGGAACGTGATATTGTTTCTTGGAATAGCATCGTTGCTGGTCTAGCAAGTACTGGAAGCCCCCATGCATTACAGTTTGTTGCTAGGATGCACGTGCTAGGCTTTAAACTAGATGAGTTCACATTCCCACGCGCTCTCAAAATTTGCGGTCATGTTGGTGAAATAGCAACGGGGAAACAAATTCATTGTTATGTTATCAAGTCAGGGTTTGAGTCTTGCAGTTACTGTATATCAGCGTTGATTGATATGTATTCCAATTGCAAGTTATTGGATGAAGCAATGTTGATCTTTGATCAGTTCTTCGACAATTCTTTTGTTGTCGAAAGCTTGGCAATTTGGAATTGTATGCTTTCTGGGTATGTTGTCAATGGGGATTATGGAAAGGCTCTTAGTCTGATTGCACATATCCATAAAACTGGTGCATATTTCGATTCTTATACCTTTAGTATTGCTTTAAAGGTTTGTATGTACTTCCAGAACTTGAGGTTGATATCTCAGGTGCATAGTTTGGTCATCACAAGTGGCTATGAGTTAGATTGCGTTATTGGAAGCATTCTTATTGATCTCTATGCGAACCAGGGGAATATTAATATTGCTTTGAGATTGTTTGAAAAGTTGCCAGAAAAAGATGTTGTGGCTTGGTCTAGTGTGATTGCTGCTTGTGCTAGATCTGGCTTAGATTCATTGGCTTTATCCCTCTTTATGAATATGACTCGTATGGATCTTGAGATTGACCATTTTATCCTTACAGTTGTTCTTAAAGTTTGTTCAACCTTGGCATCTCAGAGAATTGGAAAGCAAATTCATGCTAACTGTCTTAAAAAGGGATATGAATCAGAGGGAGTTATTGCAACTGCTCTTATTGATATGTACTCAAAATGTGGTGACATTGACGATGCCTTAGCGTTGTTTGGCTGTCTTTCAGAAAGAGACACTATGTGTTGGACAGGGATTATTGTTGGATGTGCACAAAATGGAAGAGTAGACGAGGCAATCAATCTTCTGCATGAGATGATAGAATCTGGTGAAAAGCCAAATGAAATCACCATTCTAGGTGCTCTTACGGCTTGTAGGCATGGTGGCCTAGTTGAAGAGGCATGGGCCATATTTGATTCTGTTGAAACAGACCATGGATTGAAAAGGTGCCTAGGGCATTACAGTTGTATGGTTGATCTACTTGGTCAAGCAGGACGCTTCGAAGAAGCACTAAAATTGATTAGTGACATGCCATTTAAGCCTGACAAGACGATATGGTTCTCCTTGCTTGGCGCTTGTGGAACTCACAAGAACCAGTATCTTGCTAATGTTGTTGCTGAGCATCTTCGTGCTACATTTCCAGAAGATGCTTCTGTATATGTAATGCTGTCAAACGTTTATGCAACTCTTGGAATGTGGGATAGTTTAAGCGAAGCAAGGGAAGCCTTGAAAAAAGTAGGCTTAAAAGGAGCTGGTAAAAGCTGGATTGAGATCTCAAGTTGA 2070 0.4135 MDINRIQLALRSCGIFQSIKHAKSLHSCIIKLGFLNHVFLVNNMISVYAKCLHVYDARNLFDEMPHRNIVTWTTMLSAYTNSGSPHVALSLYNQMLQSETEEPNGFVYSAVLKACGLVGDVELGRFVHQHVAQAKMEFDTVLMNALLDMYVKCGSLKDAKRVFYETPLKNSTSWNTLILGHAKSGLVGDALKLFDQMPERDIVSWNSIVAGLASTGSPHALQFVARMHVLGFKLDEFTFPRALKICGHVGEIATGKQIHCYVIKSGFESCSYCISALIDMYSNCKLLDEAMLIFDQFFDNSFVVESLAIWNCMLSGYVVNGDYGKALSLIAHIHKTGAYFDSYTFSIALKVCMYFQNLRLISQVHSLVITSGYELDCVIGSILIDLYANQGNINIALRLFEKLPEKDVVAWSSVIAACARSGLDSLALSLFMNMTRMDLEIDHFILTVVLKVCSTLASQRIGKQIHANCLKKGYESEGVIATALIDMYSKCGDIDDALALFGCLSERDTMCWTGIIVGCAQNGRVDEAINLLHEMIESGEKPNEITILGALTACRHGGLVEEAWAIFDSVETDHGLKRCLGHYSCMVDLLGQAGRFEEALKLISDMPFKPDKTIWFSLLGACGTHKNQYLANVVAEHLRATFPEDASVYVMLSNVYATLGMWDSLSEAREALKKVGLKGAGKSWIEISS 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00630 689 SUPERFAMILY TPR-like 465 662 IPR011990 GO:0005515
Adu08g00630 689 Gene3D Tetratricopeptide repeat domain 123 199 IPR011990 GO:0005515
Adu08g00630 689 Gene3D Tetratricopeptide repeat domain 359 466 IPR011990 GO:0005515
Adu08g00630 689 Gene3D Tetratricopeptide repeat domain 3 122 IPR011990 GO:0005515
Adu08g00630 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 508 542 IPR002885 -
Adu08g00630 689 Pfam PPR repeat 482 506 IPR002885 -
Adu08g00630 689 Pfam PPR repeat 275 296 IPR002885 -
Adu08g00630 689 Pfam PPR repeat 309 330 IPR002885 -
Adu08g00630 689 Pfam PPR repeat 142 165 IPR002885 -
Adu08g00630 689 Pfam PPR repeat 409 437 IPR002885 -
Adu08g00630 689 Pfam PPR repeat 583 606 IPR002885 -
Adu08g00630 689 Pfam PPR repeat 173 202 IPR002885 -
Adu08g00630 689 Pfam PPR repeat 381 407 IPR002885 -
Adu08g00630 689 Pfam PPR repeat 511 539 IPR002885 -
Adu08g00630 689 Pfam PPR repeat family 67 115 IPR002885 -
Adu08g00630 689 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 85 684 - -
Adu08g00630 689 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 38 83 - -
Adu08g00630 689 Pfam E motif 625 686 IPR046848 -
Adu08g00630 689 PANTHER BNAC03G28070D PROTEIN 38 83 - -
Adu08g00630 689 PANTHER BNAC03G28070D PROTEIN 85 684 - -
Adu08g00630 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Adu08g00630 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Adu08g00630 689 Gene3D Tetratricopeptide repeat domain 217 358 IPR011990 GO:0005515
Adu08g00630 689 Gene3D Tetratricopeptide repeat domain 481 689 IPR011990 GO:0005515
Adu08g00630 689 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Adu08g00630 689 TIGRFAM PPR: pentatricopeptide repeat domain 511 544 IPR002885 -
Adu08g00630 689 TIGRFAM PPR: pentatricopeptide repeat domain 70 98 IPR002885 -
Adu08g00630 689 TIGRFAM PPR: pentatricopeptide repeat domain 173 203 IPR002885 -
Adu08g00630 689 TIGRFAM PPR: pentatricopeptide repeat domain 583 606 IPR002885 -
Adu08g00630 689 TIGRFAM PPR: pentatricopeptide repeat domain 309 337 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00630 Adu-Chr8 11320114 11322183 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00630 1 687 Glycoside Hydrolase AT3G49170 30.086 3.77e-106 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00630 - - gmx:100780678 1033.09