Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00557 ATGGAAGTGCCGGAGTGCCCGGTGTGCCTCGAACGCTACGACAACCAAGTTTCCATCCCTAGGGTCCTATCTTGCGGTCACTCCGTCTGCGAAGCATGCCTCGTGGAGCTTCCGCTGCGGTTCCCGAACACGATTCGGTGCCCGGCGTGTACACAGCTCGTTAAGTACTCTTCAGAGCAAGGACCTTCGTCTCTTCCAAAGAACATCGACCTTCTCAGGCTTTGCCTCTCTTCATCATCTTCTTCTTCTTCGCGATCGGTGAAACCGACTCAACGGTCAACGATCGACGGTTGTGATGATCGGTCTGTAATTCGAGATCGGTTCTGGTCCGACGAGTTCTATGCCAAGTGGAAGGACTGGATTCTCCCGCACGACGCAGTTTCGGTGGAGTCCCGACCTGAACCCGAATCCGAACCCAGCGGGTTTGTGTTGCGAGGGCAATTTGGTTCGAGTTCTTCGTTGAAGGGTAGGGTTAGTGTTTGTTCTCGAAATAGCAAGTGTTTGAGCCTTGTTCCTGTTTTTTCTTTACCTCGTGTTTTGAATTGTTCGAAGTTTAAGTTCAGTTATGCTGCGAGGATTATGGAATGTTTGGTGGGGATGAAGGAGGCTGTGAGGGAGGAGTTAGCTTTGATTCTAGAAGCTTCTGTGAGGCAGGGCAGGGTTTTTAGGGTTTATGGGTTGTGGAGTGAAGTGGAGGTAGTGGATGGGTCATTGTACCTGGTGTGTGAGAGGCACAATGGTGGTAGCATTTTGCAGAAGTTTGGTGAATTGAAGAATGGGTTCCTTGGTTTGGGATTGGAAGATAAAAAAGATGGGATTTTAAGCTTTGCTGTGATTGGGAAGAGTGTGTGTGATTCTATGCTGGCTTTGCATTTGGAAGGTTTGGCTGCTGGTTGTTTAGGACCTTCGTGCTTTGCTTTCGATGAGCTTGGTGGTGTTTGTGTTGATTTGAATGAGGTTTTGGTTATGAGAAGGAAGACTGTGTATAGTTTTTCTGGTGGCAACAAGGTTAGGCAGAAAGACGAGGGATTGTTTAAGGGTTGTTTAAAAACTGAGCTTTTTTTATGCCCTGAGGTTTTGTTTCGATTACTGCAGAAGGATGCTGCTGTTAATCCGGAGGATGAGCATTCCAGATATCCGTTCGGGTATGGCTCAGATGTGTGGTCATTGGCTTGTGTGCTGTTGTGGCTTCTCATTGGAGATGCACTCCCTCAGATTCCCTTTGAAATGAGTGAAGAGAATGGCTTTGACTTATCAGCTAGTTATGTTTGTTGGGTGGAGAAAGTTAGTTCTGTTTTGGAAGACAAACTTGGCTCTGAATATCCGTCATTGAGGGGGACACTTTGCAAATGTTTGGACATGAATCCGGGAAACCGCATGAGTGTGGTGGATGTGCGGAAGTGCATTCAGGATATGTTACTCAAACCTGAATTCGATTTTCTGGAAAACTTGGAGGTCATGGTTAATCGGAGCAGCACTGGTTGCTGCTTGGTTCTTGATGAGTTGAATGAAAAAGAAGACAATGGGCCACCAGATGTTGTTGATGGGGAAGAGAAACCCGATGCAGATTTGGTTGCTAGCTTATCTAAGGGAATGGCTGAACTTAAAGATCTGCGAGGACATCTGGATTGTATCTCTGGATTAGCAATTGGCGGGGGATATCTGTTTAGCTCTTCGTTTGATAAAACTGTCAAAGTATGGTCGTTGCTGGACTTTTCTGTTTCACACACGTTTAAAGGTCATGAGGATAAAGTCATGGCTATAGTTTATGTAGATGATAAAGAACCATTGTGTGTAAGTGGTGATAATGGAGGGGGCATATTTGTCTGGGGACTTTCTGCTCCTCTCAGGCAAGACCCCTTAAGGAAATGGTATGAGCAGAAGGATTGGCGCTTCAGTGGTATCCATTCGTTAACTGTTTCAGCAAGTCGTTGTCTCTACACCGGAAGTGGAGATAGAACAATAAAAGGTTGGTTGTTAAAGGATGGAACTTTGATGTGCACAATGACTGGTCATAGGTCTGTAGTTTCCACTCTTGTAGTGTGTGATGAGGTTCTTTACAGTGGTAGTTGGGATGGAACCATTCGGTTGTGGAGTCTTAGCGATCACAGCCCATTGACAGTGCTAGGGGAAGGTATGCCTGGAGAAATGAAGTCTATCCTAGCTATTACTGTTGATAGACATTTGCTTGTTGCGGCGTATGAGAACGGCTGCATAAAGGTATGGAGAAATGATGTGTTCATGAGTTCCAAATCATTACATAATGGTGCCATTTTTGCTATGAGCATGCAAGGGCAATGCCTTTATACAGGTGGCTGGGACAAAAATATAAATATACAGGAATTAGCTGGAGATGACGAATTGGAAGTCAGAGCATTCGGTACCATTTCTTGCAGTTCTGTTGTAACGGCTATTTTAAGCTGTCAAGGAAAACTTTTTGTTGGATATGCTGACAAGTCTATCAAGGGGACGCTAGGTAGTATTAGAAAGAGTCTCAACGATTTCATGAGCTTGAACTACTGGGTTGTTCGTGATTACTACCGCCTTGTTAGCTCTGTTAACTCCTTCGAGGCCCACATTCAGAAACTCTCCGACGAACAGTTAACGGCCAAGACGGAGGAGTTTCGCAGGAGGCTCGGACGTGGCGAGACCCTTGGAGATATTCAAGCTGAGGCGTTTGCTGTTGTTCGTGAAGCTGCATGGAGGAAGCTTGGGATGCGCCATTTTGATGTTCAGATTATTGGTGGGGCAGTACTGCATGATGGGTCAATTGCCGAGATGAAAACAGGGGAGGGGAAAACATTGGTTTCCACGTTAGCAGCGTATCTTAATGCCCTCACTGGTGAGGGTGTTCATGTGGTAACCGTCAATGATTATTTAGCTCAGCGTGATTCTGAATGGATGGGGAGTGTTCATCGCTTCTTAGGTCTTTCTGTAGGCCTTATTCAGAAGGGGATGAATGCTGCAGAGCGGAGATCCAACTATAGATGTGATATAACATATACCAATAACTCTGAACTTGGCTTTGATTATTTACGAGATAATCTTGCTGGAAATAGGGAAGACCTTGTGATGAGATGGCCAAAACCATTTCATTTTGCAATTGTTGATGAAGTGGATTCTGTCCTGATAGATGAAGGAAGAAATCCTTTGTTAATAAGCGGTGAGGCTAGTAAGGATGCTGCACGATATCCTGTTGCTGCAAAAGTAGCTGAACTGCTTGTGCAGGGCACTCATTATAACGTGGAGCTTAAAAATGAGTCAGTGGAGTTGACTGAGGAAGGAATTGCTCTTGCTGAAATGGCTCTTGAAACCAATGACCTTTGGGATGAAAATGATCCCTGGGCTAGGTTTGTGATGAACGCTTTAAAAGCTAAAGAGTTCTATCGACGAGATGTAGAGTACATAGTCCGAGATGGGAAGGCTTTAATTATCAATGAGCTGACAGGAAGAGTTGAAGAGAAACGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCCGTTGTTGTGGCACAAATCACTTACCAGTCATTATTCAAGCTCTATCCAAAATTGTCAGGAATGACTGGGACTGCAAAAACAGAAGAGAGAGAATTCTTAAAAATGTTCCAGATGCCAGTCATTGAAGTGCCCACAAATCTTCCTAATATTCGTAAAGATCTTCCTATTCAAGCTTTCGCCACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAATATATGTTTAGACAAGGCCGTCCTATTTTAGTTGGGACAACTAGTGTAGAAAATTCTGAACTTTTGGCTGGTCTGCTTTGGGAGTGGAATATTCCCCACAATGTCCTGAATGCTCGACCTAAGTATGCTGCAAGAGAAGCTGAAATTGTTGCACAGGCAGGACGCAAACATGCCATTACCATCTCTACAAATATGGCAGGCAGGGGCACGGATATAATCCTTGGAGGAAATCCAAAAATGCTTGCCAGAGAAATTATAGAGGATAGCGTAATTCATTTATTGACACAACAGGTTCCAAATGTTGAACTTGCTAGTGAGACTGTTTCGCGACAGGTAGTATTTTATATTCTTTGCAACATGAATTATTCAGCCAAATATGTCTCGAAAAGTGAGGGTAGAAACTGGACATATCAGAAGGCTAAATCCTTGATCACAGAGGCTATTCAATTTAGTCTGTCATATAGTTTTGAGGAGCTGGAGGAGCTTGCTAATGAAGATTCTGAATTTTACCCTCTTGGTCCAACAGTAGCACTTGCCTATGTGTCAGTTCTGAAGGATTGTGAAGAGCACTGTTTGCATGAAGGCTCTGAAGTTAAAAGGCTTGGTGGCCTTCATGTAATTGGTACATCTTTACATGAGTCCCGGAGAATAGATAACCAGCTCCGTGGCAGAGCAGGAAGGCAGGGAGATCCAGGTTCAACGCGATTTATGGTTAGCTTGCAGGACGAGATGTTTCAAAAGTTCAATTTTGATACGGAATGGGCTGTCAGACTTATATCAAAGATTACAAATGATGAGGATATGCCAATTGAGGGTGATGCCATTGTGAAGCAGCTCTTGGGGTTGCAAATCAATGCAGAGAAGTTCTTCTTCAGCATAAGAAAGAGCCTAGTTGAATTTGATGAAGTATTGGAGGTGCAGCGAAAGCATGTTTATGATCTAAGGCAGTTGATCTTGACTGGAGATGATGAAAGCTGTTCCCAACACATATTCCAGTACATGCAAGCAGTTGTGGATGAGATTGTCTTCAGTAACATCAATCCAATGAAGCATCCATGTACCTGGAGTTTGAGTAAGCTCTTGAAAGAGTATATGACAATTGGTGGAAAGCTGCTTCATGAATCTTTTGGAGGGATCACCGATGACTCTTTGTTAACCTCACTTGAGCAACTGAATGATGCGGGTTCCATTGATATTGTCAACTTTTCCCTTCCAAATCTGCCCACACCTCCAAATGCGTTCAGGGGAATCCGCAGGAAAAGCTCTTCATTAAGACGTTGGCTTGTTATTTGCTCTGATGATCTAATCGAGAACGGGAAGTATCGGACAACATCTAATCTCCTCCGCAAATATCTTGGAGATTTTCTAATTGCTTCATATCTAAATGTTGTTGAAGAGTCTGGTTATGAAGATAAATATGTCAAGGAAATTGAGAGAGCTGTTCTTTTGAAAACTCTTGATTGCTTCTGGAGAGATCACCTTGTAAACATGAATCGGCTCAGTTCTGCAGTGAATATAAGGAGCTTTGGGCACAGAAACCCTCTTGAAGAGTACAAAATTGACGGTTGCCGTTTTTTCATCTCAATGCTTAGTGCAACAAGGAGGTTAACTGTAGAAGCGCTGTTACAGCATTGTGTAGATATTGTATTAAAGAACTCTGGCCACTCCTTCTCCGGTAGCGTTATCCGTATTTCTGGTTTGTCAAAGGGACTGGGATGTGACATGGAGATGCACTATACAGGGTAA 5502 0.44 MEVPECPVCLERYDNQVSIPRVLSCGHSVCEACLVELPLRFPNTIRCPACTQLVKYSSEQGPSSLPKNIDLLRLCLSSSSSSSSRSVKPTQRSTIDGCDDRSVIRDRFWSDEFYAKWKDWILPHDAVSVESRPEPESEPSGFVLRGQFGSSSSLKGRVSVCSRNSKCLSLVPVFSLPRVLNCSKFKFSYAARIMECLVGMKEAVREELALILEASVRQGRVFRVYGLWSEVEVVDGSLYLVCERHNGGSILQKFGELKNGFLGLGLEDKKDGILSFAVIGKSVCDSMLALHLEGLAAGCLGPSCFAFDELGGVCVDLNEVLVMRRKTVYSFSGGNKVRQKDEGLFKGCLKTELFLCPEVLFRLLQKDAAVNPEDEHSRYPFGYGSDVWSLACVLLWLLIGDALPQIPFEMSEENGFDLSASYVCWVEKVSSVLEDKLGSEYPSLRGTLCKCLDMNPGNRMSVVDVRKCIQDMLLKPEFDFLENLEVMVNRSSTGCCLVLDELNEKEDNGPPDVVDGEEKPDADLVASLSKGMAELKDLRGHLDCISGLAIGGGYLFSSSFDKTVKVWSLLDFSVSHTFKGHEDKVMAIVYVDDKEPLCVSGDNGGGIFVWGLSAPLRQDPLRKWYEQKDWRFSGIHSLTVSASRCLYTGSGDRTIKGWLLKDGTLMCTMTGHRSVVSTLVVCDEVLYSGSWDGTIRLWSLSDHSPLTVLGEGMPGEMKSILAITVDRHLLVAAYENGCIKVWRNDVFMSSKSLHNGAIFAMSMQGQCLYTGGWDKNINIQELAGDDELEVRAFGTISCSSVVTAILSCQGKLFVGYADKSIKGTLGSIRKSLNDFMSLNYWVVRDYYRLVSSVNSFEAHIQKLSDEQLTAKTEEFRRRLGRGETLGDIQAEAFAVVREAAWRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDSEWMGSVHRFLGLSVGLIQKGMNAAERRSNYRCDITYTNNSELGFDYLRDNLAGNREDLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVAELLVQGTHYNVELKNESVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVEYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEREFLKMFQMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEYMFRQGRPILVGTTSVENSELLAGLLWEWNIPHNVLNARPKYAAREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKMLAREIIEDSVIHLLTQQVPNVELASETVSRQVVFYILCNMNYSAKYVSKSEGRNWTYQKAKSLITEAIQFSLSYSFEELEELANEDSEFYPLGPTVALAYVSVLKDCEEHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDMPIEGDAIVKQLLGLQINAEKFFFSIRKSLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHIFQYMQAVVDEIVFSNINPMKHPCTWSLSKLLKEYMTIGGKLLHESFGGITDDSLLTSLEQLNDAGSIDIVNFSLPNLPTPPNAFRGIRRKSSSLRRWLVICSDDLIENGKYRTTSNLLRKYLGDFLIASYLNVVEESGYEDKYVKEIERAVLLKTLDCFWRDHLVNMNRLSSAVNIRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVEALLQHCVDIVLKNSGHSFSGSVIRISGLSKGLGCDMEMHYTG 1833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00557 1833 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 826 1797 - -
Adu08g00557 1833 PRINTS SecA protein signature 995 1015 IPR000185 GO:0005524|GO:0006605|GO:0006886
Adu08g00557 1833 PRINTS SecA protein signature 1185 1202 IPR000185 GO:0005524|GO:0006605|GO:0006886
Adu08g00557 1833 PRINTS SecA protein signature 888 912 IPR000185 GO:0005524|GO:0006605|GO:0006886
Adu08g00557 1833 PRINTS SecA protein signature 1222 1235 IPR000185 GO:0005524|GO:0006605|GO:0006886
Adu08g00557 1833 PRINTS SecA protein signature 926 940 IPR000185 GO:0005524|GO:0006605|GO:0006886
Adu08g00557 1833 PRINTS SecA protein signature 942 952 IPR000185 GO:0005524|GO:0006605|GO:0006886
Adu08g00557 1833 PRINTS SecA protein signature 1148 1170 IPR000185 GO:0005524|GO:0006605|GO:0006886
Adu08g00557 1833 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 914 1077 IPR014001 -
Adu08g00557 1833 SUPERFAMILY WD40 repeat-like 533 822 IPR036322 GO:0005515
Adu08g00557 1833 Pfam SecA Wing and Scaffold domain 1521 1795 IPR011116 GO:0016020|GO:0017038
Adu08g00557 1833 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 669 701 - -
Adu08g00557 1833 ProSitePatterns SecA family signature. 1311 1326 IPR020937 GO:0006605|GO:0006886|GO:0016020
Adu08g00557 1833 SMART serkin_6 142 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu08g00557 1833 ProSiteProfiles Trp-Asp (WD) repeats profile. 669 708 IPR001680 GO:0005515
Adu08g00557 1833 SMART WD40_4 744 781 IPR001680 GO:0005515
Adu08g00557 1833 SMART WD40_4 702 743 IPR001680 GO:0005515
Adu08g00557 1833 SMART WD40_4 662 699 IPR001680 GO:0005515
Adu08g00557 1833 SMART WD40_4 531 568 IPR001680 GO:0005515
Adu08g00557 1833 SMART WD40_4 571 611 IPR001680 GO:0005515
Adu08g00557 1833 SMART WD40_4 617 659 IPR001680 GO:0005515
Adu08g00557 1833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1226 1504 IPR027417 -
Adu08g00557 1833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 836 1224 IPR027417 -
Adu08g00557 1833 ProSiteProfiles Protein kinase domain profile. 137 473 IPR000719 GO:0004672|GO:0005524|GO:0006468
Adu08g00557 1833 Pfam SecA preprotein cross-linking domain 1063 1167 IPR011130 GO:0016020|GO:0017038
Adu08g00557 1833 Gene3D - 617 829 IPR015943 GO:0005515
Adu08g00557 1833 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Adu08g00557 1833 Gene3D - 847 1224 IPR027417 -
Adu08g00557 1833 Pfam WD domain, G-beta repeat 535 568 IPR001680 GO:0005515
Adu08g00557 1833 Pfam WD domain, G-beta repeat 665 699 IPR001680 GO:0005515
Adu08g00557 1833 CDD DEXDc_SecA 867 1223 - -
Adu08g00557 1833 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 826 1797 IPR000185 GO:0005524|GO:0006605|GO:0006886
Adu08g00557 1833 Gene3D - 1226 1523 IPR027417 -
Adu08g00557 1833 SUPERFAMILY Pre-protein crosslinking domain of SecA 1055 1176 IPR036670 GO:0016020|GO:0017038
Adu08g00557 1833 SMART ring_2 6 50 IPR001841 -
Adu08g00557 1833 Pfam SecA DEAD-like domain 843 1210 IPR011115 GO:0005524|GO:0016020|GO:0017038
Adu08g00557 1833 Hamap Protein translocase subunit SecA [secA]. 827 1799 IPR000185 GO:0005524|GO:0006605|GO:0006886
Adu08g00557 1833 SMART SecA_PP_bind_2 1056 1167 IPR011130 GO:0016020|GO:0017038
Adu08g00557 1833 TIGRFAM secA: preprotein translocase, SecA subunit 853 1615 IPR000185 GO:0005524|GO:0006605|GO:0006886
Adu08g00557 1833 Gene3D - 1057 1177 - -
Adu08g00557 1833 Gene3D - 521 615 IPR015943 GO:0005515
Adu08g00557 1833 Gene3D Helical scaffold and wing domains of SecA 1526 1636 - -
Adu08g00557 1833 Gene3D Helical scaffold and wing domains of SecA 1675 1799 - -
Adu08g00557 1833 SUPERFAMILY RING/U-box 5 58 - -
Adu08g00557 1833 SMART SecA_DEAD_2 832 1211 IPR011115 GO:0005524|GO:0016020|GO:0017038
Adu08g00557 1833 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Adu08g00557 1833 Pfam zinc-RING finger domain 5 52 IPR001841 -
Adu08g00557 1833 SUPERFAMILY Protein kinase-like (PK-like) 217 477 IPR011009 -
Adu08g00557 1833 SUPERFAMILY Helical scaffold and wing domains of SecA 1527 1797 IPR036266 -
Adu08g00557 1833 ProSiteProfiles Trp-Asp (WD) repeats profile. 538 577 IPR001680 GO:0005515
Adu08g00557 1833 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Adu08g00557 1833 ProSiteProfiles SecA family profile. 828 1523 IPR014018 -
Adu08g00557 1833 CDD RING-HC_TRIM32_C-VII 5 51 - -
Adu08g00557 1833 CDD SF2_C_secA 1229 1491 IPR044722 -
Adu08g00557 1833 Gene3D Transferase(Phosphotransferase) domain 1 200 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00557 Adu-Chr8 10047444 10068390 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00557 553 795 Acyl Lipid Metabolism Gene Families AT3G18860 28.125 1.88e-12 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00557 K03070 - gmx:100793437 2773.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00557 08 10047444 10068390 Adu08g00557 08 10047444 10068390 ECH