Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00500 ATGCAAAGGTTTAGCCTTTGCACAAGTACTAACAATACATTAACGTACTCATCGCTCTTGTTTTCTTCCATAAGGAACCACATTAGTCAAGGTTCTCATAAATGTGCTCTTCTTCTGTATAAACAAACTCGCCGCGAAGGTCTCTATGATCCCAGCGTTGTCCCTTTGTTGTTCAAGGCTTGTGTTTCTCTCTCAATTCTTCACCACGTTAAGGCCTTGCATGCCGAGTCCATTAAAGCTGGTTCACATTGTGATGTGTTCATCGGAACAGCATTAGTAGGAACTTATTCAAAATGTGGTATCCTTGGGGACTCCCGCAAGGTGTTTGATACAATGCCTGACAGAAATGTTGTAACTTGGAATGCAATGATTGGTGGGTACTTGAGAGCTGGGGACAAAGAATCTGCCTCCTCAATGTTTGAGGCGATGCCGGAGAAGACTCCCGTGTCTTGGAGCCAGATGATTGATGGGTTTGCAAGGAACGGGGATACTGCTGCTGCTAGGAGGTTGTTCAATAAGGTTCCGGACGAGGCAAAGAACGTAGTGACGTGGACTGTGATGGTTGATGGGTATGCTAGGAATGGGGATATGGAAGCTGCCAGGGAGATCTTTGAACAGATGCCAATTAGGAACTGCTTTGTGTGGTCATCTATGATTTGTGGTTATTGCAAGAAGGGCATTGTCGAGGAGGCTGGGGTGATTTTCGAGCGCGTTCCAGAACGCAACGTGGAGATTTGGAATTCAATGATTGCTGGGCATGTCCAGAATGGATTTGGTGAAAAAGCACTGCAGCTTTTTGAGGAAATGAAGGGTGAAGGGTTTGAACCGGATGAATTCACTGTTGTTAGTGTTTTATCTGCATGTTCTCAGCTGGGACTCTTGGATGCCGGTAAGGAAATCCATAACATGATAAAGCAGAAAGGGATGAGGTTGAGTCCCTTTGTTGTGAGTGGATTGGTTGACATGTATGCAAAATGTGGGGACCTGGCCAATGCAAGGTTGGTATTTGAAGCATCAGAGTCCATTAAGAAGAACATCATCTGCTGGAACGCAATGATTTCAGGCTTTGCCATCAATGGAAAATTCCATGAAGTCCTTGAGTGTTTTGGCAGATTGGAGGAATCAAATATAAAGCCTGATTCAATCACCTGTCTCATTGTGCTCTCTGCTTGTGCTCATGGTGGTTTGGTAAATGAGGCTTTGGAAGTAGCAGCTAAAATGGAAAGATATGGAATTGAAATAGGAATTAGACATTATGGATGCATGGTTGATCTATTGGGAAGAGCAGGGAGGTTAAAGAAGGCTTATGACTTGATAAAGAGAATGCCAATGAAACCGAATGAAGCTGTTTTTGGGGCACTGCTTGGTGCATGCCGGATTCATTCAGACGTGCAAATGGCAGAACAAGTAATGAAATTAATCAGTGCAAGCACTGTTTCAAGTTCTGATTCTCTCAATGTGCTTCTGTTCAATACCTATGCAGCTTCTGAAAAATGGGAGAAATGTGAACAGATGAGGATCAGAGTAGATGAAAGAATTCAAAAGACACCTGGGTGCAGTTCATTCATCTTCAGTGCTTCGTCCATGTTCACTTGGACAAAGTAA 1605 0.4368 MQRFSLCTSTNNTLTYSSLLFSSIRNHISQGSHKCALLLYKQTRREGLYDPSVVPLLFKACVSLSILHHVKALHAESIKAGSHCDVFIGTALVGTYSKCGILGDSRKVFDTMPDRNVVTWNAMIGGYLRAGDKESASSMFEAMPEKTPVSWSQMIDGFARNGDTAAARRLFNKVPDEAKNVVTWTVMVDGYARNGDMEAAREIFEQMPIRNCFVWSSMICGYCKKGIVEEAGVIFERVPERNVEIWNSMIAGHVQNGFGEKALQLFEEMKGEGFEPDEFTVVSVLSACSQLGLLDAGKEIHNMIKQKGMRLSPFVVSGLVDMYAKCGDLANARLVFEASESIKKNIICWNAMISGFAINGKFHEVLECFGRLEESNIKPDSITCLIVLSACAHGGLVNEALEVAAKMERYGIEIGIRHYGCMVDLLGRAGRLKKAYDLIKRMPMKPNEAVFGALLGACRIHSDVQMAEQVMKLISASTVSSSDSLNVLLFNTYAASEKWEKCEQMRIRVDERIQKTPGCSSFIFSASSMFTWTK 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00500 534 Pfam PPR repeat 182 212 IPR002885 -
Adu08g00500 534 Pfam PPR repeat 418 443 IPR002885 -
Adu08g00500 534 Pfam PPR repeat 149 173 IPR002885 -
Adu08g00500 534 Pfam PPR repeat 118 146 IPR002885 -
Adu08g00500 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Adu08g00500 534 Gene3D Tetratricopeptide repeat domain 147 210 IPR011990 GO:0005515
Adu08g00500 534 Gene3D Tetratricopeptide repeat domain 211 316 IPR011990 GO:0005515
Adu08g00500 534 Gene3D Tetratricopeptide repeat domain 5 146 IPR011990 GO:0005515
Adu08g00500 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 146 IPR002885 -
Adu08g00500 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Adu08g00500 534 SUPERFAMILY TPR-like 106 269 IPR011990 GO:0005515
Adu08g00500 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 177 IPR002885 -
Adu08g00500 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 180 214 IPR002885 -
Adu08g00500 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Adu08g00500 534 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Adu08g00500 534 Gene3D Tetratricopeptide repeat domain 317 528 IPR011990 GO:0005515
Adu08g00500 534 PANTHER BNACNNG13520D PROTEIN 20 521 - -
Adu08g00500 534 PANTHER OS01G0913400 PROTEIN-RELATED 20 521 - -
Adu08g00500 534 Pfam PPR repeat family 242 288 IPR002885 -
Adu08g00500 534 Pfam PPR repeat family 344 392 IPR002885 -
Adu08g00500 534 TIGRFAM PPR: pentatricopeptide repeat domain 347 381 IPR002885 -
Adu08g00500 534 TIGRFAM PPR: pentatricopeptide repeat domain 419 442 IPR002885 -
Adu08g00500 534 TIGRFAM PPR: pentatricopeptide repeat domain 382 414 IPR002885 -
Adu08g00500 534 TIGRFAM PPR: pentatricopeptide repeat domain 245 278 IPR002885 -
Adu08g00500 534 TIGRFAM PPR: pentatricopeptide repeat domain 118 145 IPR002885 -
Adu08g00500 534 TIGRFAM PPR: pentatricopeptide repeat domain 182 212 IPR002885 -
Adu08g00500 534 TIGRFAM PPR: pentatricopeptide repeat domain 214 244 IPR002885 -
Adu08g00500 534 TIGRFAM PPR: pentatricopeptide repeat domain 149 173 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00500 Adu-Chr8 8956882 8958486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00500 50 520 Glycoside Hydrolase AT3G49170 30.992 1.54e-61 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00500 - - gmx:100802813 743.806