Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00498 ATGAGTCACAGAGGAATGGACGACGATGATGAGGAGGAGTACGAGGAGGACGAGCAGGTAGCCGACTTCGATGAGGAGGCAGAGGAGGAAGAGGACGATAGGGGGCGCGGCAGCGGCGGCAGGAAGCGTCGGAGATCTGATTTCATCGATGATGATGCTGAGGAGGTGGATGAGGATGAGGAGGAGGAGGACGATGACGATGATTATGGGGGTGGTGGCGGCCGCAGGCGCCAGAATAGGAAAGCCTCTGCTTCTCATTTCTTCGATGACATAGCGGAGGTGGATTCAGATGGGGAAGAAGAAGAAGAGGAAGGGGAGGACGATTTCTTTGTTGATAATGGAAATGATATTCCTGAGGACAATGTCAGTAGGAGCAGACTTCATAGGCCTTTGCATGAGCAAGATAATGAAGATTTTGAAGCTTTAGAAAGACACATCCAGGAAAGATATGCAAGGCGTGTGGAATCTTTTGATGAAGAGGCTACAGATGTAGAACAGCAAGCTCTTTTGCCATCTGTTAGAGATCCAAAGCTGTGGATGGTGAAATGTCAGATTGGTCATGAGAGAGAGACAGCTGTTTGCCTTATGCAAAAGTATATAGATAAGGGGGCTGAATTGCAAATCAGGTCAGCTATTGCCCTTGATCATCTTAAAAACTATATTTATGTGGAAGCAGATAAAGAGGCCCACGTGAGAGAGGCTATTAAGGGTTTAAGGAACATATATGGGGCGTCAAAAATAACACTAGTTCCAATAAGAGAAATGACGGATGTGCTGTCAGTTGAAAGCAAAGCAATTGATCTTGCCAGAGATACTTGGGTCAGAATGAAGATTGGCACATATAAAGGGGACCTTGCCAAGGTAGTTGATGTTGATAATGTGAGGCAGAGGGTTACGGTGAAACTGATTCCAAGGATAGACTTGCAGGCGCTTGCAAATAAACTGGAAGGTAGAGAAGTTGTGAAAAAGAAGGCGTTTGTCCCTCCTCCTCGTTTTTTAAATGTTGATGAAGCTAGGGAACTGCATATTCGTGTCGAGCATAGACGTGATGCCTATGGGGAAAGATTTGATGCAATTGGAGGAATGATGTTTAAGGATGGATTCTTGTACAAAACTGTATCAATAAAATCCATTAATGCTCTAAACGTCAAACCTACTTTGAATGAACTTGAAAATTTTCGAAAACCTGGTGAGAGTGGTGACAGCGATGTAGCAAGTCTGTCAACTTTGTTCGCTAACAGAAAGAAAGGCCATTTTATGAAAGGTGATGCTGTAATTGTTGTGAAGGGTGATTTGAAGAAGTTGAAGGGGTGGGTGGAGAAAGTAGATGAAGATAATGTTCATATAAGACCAGAATTGAAGGGTCTTCCTAAAACCCTTGCTGTAAATGAAAGGGAACTTTGTAAATATTTTGAACCTGGAAACCACGTTAAGGTTGTTACTGGTGCTCAAGAGGGTGCTACCGGCATGGTTGTGAAGGTGGAACAGCATGTATTGATTCTATTATCCGACACAACAAAAGAACATATCCGTGTGTTTGCAGATGATGTTGTGGAGAGTTCTGAAGTGACCACTGGAATTACAAAAATTGGGGACTATGAACTTCGTGATCTTGTATTGTTAGATAATATGGACTTTGGTGTAATAGTTCGTGTAGAAAGCGAGGCATTTCAGGTTCTTAAGGGGACTGCAGACAGGCCTGAAGTTGCACTTGTTAAATTAAGAGAGATTAAATGCAAGGTAGAGAAGAAAATAAATGCGCAGGATAAGCATAAGAATACAATCTCAGTAAAGGATGTTGTGCGAGTTGTCGAAGGTCCTTGCCATGGAAAATCTGGTCCTGTGGAGCACATATATAGGGGGTTCTTGTTCATCTATGATCGCCATCATCTTGAACATGCAGGCTTTATATGTGCTAGGGCTTGCTCGTGTTTGGTCGTTGGAGGTTCACGTTCGAGTGGTGACAGAAACGGTGATGCCTACTCGAGATTCCCTGGCCTTAGAACTCCACCTCGTATTCCCCAGTCCCCGAGAAGGTTTTCACGAGGAGGGCCTCCAATTGATTCTTGA 2070 0.4391 MSHRGMDDDDEEEYEEDEQVADFDEEAEEEEDDRGRGSGGRKRRRSDFIDDDAEEVDEDEEEEDDDDDYGGGGGRRRQNRKASASHFFDDIAEVDSDGEEEEEEGEDDFFVDNGNDIPEDNVSRSRLHRPLHEQDNEDFEALERHIQERYARRVESFDEEATDVEQQALLPSVRDPKLWMVKCQIGHERETAVCLMQKYIDKGAELQIRSAIALDHLKNYIYVEADKEAHVREAIKGLRNIYGASKITLVPIREMTDVLSVESKAIDLARDTWVRMKIGTYKGDLAKVVDVDNVRQRVTVKLIPRIDLQALANKLEGREVVKKKAFVPPPRFLNVDEARELHIRVEHRRDAYGERFDAIGGMMFKDGFLYKTVSIKSINALNVKPTLNELENFRKPGESGDSDVASLSTLFANRKKGHFMKGDAVIVVKGDLKKLKGWVEKVDEDNVHIRPELKGLPKTLAVNERELCKYFEPGNHVKVVTGAQEGATGMVVKVEQHVLILLSDTTKEHIRVFADDVVESSEVTTGITKIGDYELRDLVLLDNMDFGVIVRVESEAFQVLKGTADRPEVALVKLREIKCKVEKKINAQDKHKNTISVKDVVRVVEGPCHGKSGPVEHIYRGFLFIYDRHHLEHAGFICARACSCLVVGGSRSSGDRNGDAYSRFPGLRTPPRIPQSPRRFSRGGPPIDS 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00498 689 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT5 29 687 - -
Adu08g00498 689 CDD KOW_Spt5_4 598 640 IPR041977 -
Adu08g00498 689 SUPERFAMILY Translation proteins SH3-like domain 462 521 IPR008991 -
Adu08g00498 689 SMART nusgn_4 175 262 IPR006645 GO:0140673
Adu08g00498 689 Pfam KOW motif 473 498 IPR005824 -
Adu08g00498 689 MobiDBLite consensus disorder prediction 8 32 - -
Adu08g00498 689 MobiDBLite consensus disorder prediction 33 50 - -
Adu08g00498 689 MobiDBLite consensus disorder prediction 119 140 - -
Adu08g00498 689 CDD KOW_Spt5_3 470 520 IPR041976 -
Adu08g00498 689 Gene3D - 157 260 IPR036735 GO:0006355
Adu08g00498 689 MobiDBLite consensus disorder prediction 1 140 - -
Adu08g00498 689 MobiDBLite consensus disorder prediction 51 68 - -
Adu08g00498 689 CDD NGN_Euk 177 260 IPR039385 -
Adu08g00498 689 ProSitePatterns Ribosomal protein L24 signature. 422 439 IPR005825 GO:0003735|GO:0005840|GO:0006412
Adu08g00498 689 CDD KOW_Spt5_1 271 308 IPR041973 -
Adu08g00498 689 Pfam Early transcription elongation factor of RNA pol II, NGN section 177 259 IPR005100 -
Adu08g00498 689 SMART kow_9 418 445 IPR005824 -
Adu08g00498 689 SMART kow_9 470 497 IPR005824 -
Adu08g00498 689 SMART kow_9 267 294 IPR005824 -
Adu08g00498 689 SMART kow_9 594 621 IPR005824 -
Adu08g00498 689 Coils Coil 147 167 - -
Adu08g00498 689 PANTHER SUPPRESSOR OF TY 5 29 687 IPR039659 GO:0006357|GO:0032784
Adu08g00498 689 Pfam Spt5 transcription elongation factor, acidic N-terminal 87 171 IPR022581 -
Adu08g00498 689 CDD KOW_Spt5_2 419 469 IPR041975 -
Adu08g00498 689 Gene3D - 267 309 IPR014722 -
Adu08g00498 689 Gene3D - 413 470 IPR014722 -
Adu08g00498 689 Gene3D - 473 522 IPR014722 -
Adu08g00498 689 MobiDBLite consensus disorder prediction 93 114 - -
Adu08g00498 689 MobiDBLite consensus disorder prediction 649 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00498 Adu-Chr8 8948068 8952906 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00498 K15172 - gmx:100801380 1030.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00498 08 8948068 8952906 Adu08g00498 08 8948068 8952906 ECH