Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00489 ATGGTGCTCACGTCCTCTGCACGTGACTACGTCAACCGCATGCTGCAGGACATCTCCGGCATGAAGGTCCTAATCCTCGATTGCCAAACGGTGAGTATTGTGAGCGTTGTGTATTCACAGTCAGAGCTTCTTCAGAAGGAAGTATTCTTGGTGGAGTTGGTGGATTCCATAACCAAGTCGAAGGAGCTTATGTCGCATCTCAAGGCCGTTTACTTCCTTCGCCCTACGACGGAGAACATCCAGCATTTGCGCCGCCAGCTGGCCGCTCCTAGATTTGGGGAGTATCACCTATTTTTCTCCAACATATTGAAGGACACTCAAATTCACATACTTGCTGATTCAGATGAACATGAAGCTGTCCAGCAAGTTCAGGAGTTCTACGCAGACTTTGTTGCAGTTGATCCTTATCATTTCACTTTGCACATCCCTTCAATTATTAGATATCAAAGGACGTCTGACATTGCCAAAAGAATAGCACACGAAGCAAATAAACTGATGTACCAAGAAGAAAGTGGTCTTTTCGATTTTAGGCGAACAGAAGTTTCACCACTGTTGTTGGTGCTTGACAGGAGAGATGATCCTGTAACCCCATTGCTCAATCAATGGACCTATCAGGCTATGGTTCATGAATTGATAGGAATCCAAGACAACAAGGTGGACTTGAAATCCATTGATAAATTTTCAAAGGATCAGGAGGAGGTTGTGTTGTCGTCGGAACAAGATTCATTTTTCAAAGCTAACATGTATGAGAATTTTGGAGATATAGGTATGAATATCAAGCGGCTGGTTGATGAATTTCAGCAAGTGTCAAAGAGCAACCAGAACATCCAAACGATAGAGGACATGGCCAAATTTGTTGACAATTATCCTGAGTACAGAAAAATGCATGGGAATGTGTCAAAGCATGTGACTTTGGTAACAGAAATGAGCAAGATAGTACAACAGCGAAAACTTATGACATTTTCACAAACAGAACAGGAACTGGCTTGCAATGGAGGACAAGGGGCTGCGTTTGAGGCAGTGACAAATCTACTAAATGATGATAGCATATCAGATGTGGACCGGCTGCGTTTAGTCATGCTATATGCTTTGCGATATGAGAAGGATAGCCCTGTTCAGTTAATGCAGCTTTTCAACAAACTGGCTTCCCGATCTGCCAAGTATAAATCTGGGCTCGTCCAGTTTCTTTTAAAGCAAGCAGGTGTTGACAAGAGAACTGGTGATCTTTTTGGAAATCGAGATCTAATGAATATTGCCCGTAATATGGCCCGTGGGTTGAAGGGTGTTGAGAATGTGTATACCCAGCACCAACCCCTTCTTTTCCAAACCATGGAAAGCATTGTCAAAGGACGGCTGAGAGATGTGGACTACCCATTTGTTGGAAATCACTTTCAACAAGGAAGGCCACAGGAAGTAATCATCTTCATTGTTGGTGGGACAACTTATGAGGAGTCAAGATGTGTTGCTCTACAAAATGCCAGCAATCCTGGAATTCGGTTTATACTTGGTGGCTCTTCTGTTCTCAATTCTAGGAGTTTTATTAGGGACCTGGAAGAATCTCAAAGGGTAGCTCGTTCGAACACCAGCATTGTTTGA 1596 0.433 MVLTSSARDYVNRMLQDISGMKVLILDCQTVSIVSVVYSQSELLQKEVFLVELVDSITKSKELMSHLKAVYFLRPTTENIQHLRRQLAAPRFGEYHLFFSNILKDTQIHILADSDEHEAVQQVQEFYADFVAVDPYHFTLHIPSIIRYQRTSDIAKRIAHEANKLMYQEESGLFDFRRTEVSPLLLVLDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVDLKSIDKFSKDQEEVVLSSEQDSFFKANMYENFGDIGMNIKRLVDEFQQVSKSNQNIQTIEDMAKFVDNYPEYRKMHGNVSKHVTLVTEMSKIVQQRKLMTFSQTEQELACNGGQGAAFEAVTNLLNDDSISDVDRLRLVMLYALRYEKDSPVQLMQLFNKLASRSAKYKSGLVQFLLKQAGVDKRTGDLFGNRDLMNIARNMARGLKGVENVYTQHQPLLFQTMESIVKGRLRDVDYPFVGNHFQQGRPQEVIIFIVGGTTYEESRCVALQNASNPGIRFILGGSSVLNSRSFIRDLEESQRVARSNTSIV 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00489 531 SUPERFAMILY Sec1/munc18-like (SM) proteins 3 519 IPR036045 -
Adu08g00489 531 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 3 517 IPR001619 GO:0016192
Adu08g00489 531 PIRSF VPS45_Sec1 138 528 IPR001619 GO:0016192
Adu08g00489 531 PIRSF VPS45_Sec1 1 145 IPR001619 GO:0016192
Adu08g00489 531 Gene3D - 139 518 IPR027482 -
Adu08g00489 531 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 45 3 517 - -
Adu08g00489 531 Pfam Sec1 family 142 516 IPR001619 GO:0016192
Adu08g00489 531 Pfam Sec1 family 22 142 IPR001619 GO:0016192
Adu08g00489 531 Gene3D - 316 437 - -
Adu08g00489 531 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 201 314 IPR043127 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00489 Adu-Chr8 8779077 8783423 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00489 K12479 - gmx:100782786 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00489 08 8779077 8783423 Adu08g00489 08 8779077 8783423 ECH