Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00458 ATGGTGAAGCTAGCATCGGCAAGGGACTTCCGTACGTACGGGCCGGGCCTCACCAGAAACCGTTACGAGTACATCAACGCGGGGCTTTACCTGTTTTCCACCGTGGTCCTGAGTTGTGGTTTCGCATCTCAGTTTTCTTCCGAGGCTTCTTCGGGGCTCGTGGTTTTCCTCATTGCATTGGGCCTCATGTTAATCGTAAACTTTCATGACCTTATGGCGCATCTTGTTCCCATTGATTTCCGCTTTCAGTTGATGGCCTTTGATCCTCAGCTCGCCTTCGTCGAATTCGCTGTTCCCCTCTTCAACATGCTCGGAACGCTTCTTACTTTTCTTGCCGTTTTCTTCATTTTTCTTCAGGAAGAGAAAGGACATGGTTACTTCAAATTGGAAAAGCATGCTCTGAACATGTTGGTTGCTGGTCCTGTACTATGGGTGGTGGGATCGATTCACAATTCATGTCAAATCTACGAGAGAGCAGATGGTCATGTTCAAATCTTGCAGCAATGTGTGTATATCCCCTTCTTGATGGGGAGTATGTTGTTCATGATTAGTTCCTGCCTCAATTATATTGAGCAATCTAGAGTGATCCACCATGGCCTCGGCTTACTTGGTAGGGATTGGATCTGGTTAGGAATCTCGGGTACCATATTTTTCTTCATTGGTGGATTGATAAATGTGGTGAAAGTGTTCAAGATGCAACAAATGAATGGTATGAGGCTGGAGAAGCTGCGAGGTGGAGCACAAGAGCAACTAATAAGAGCGAGAGAAGGACATGTTCCCCTGCTTTCAGAACATCATCAAATAAGAATAAGACATAATCCACCACCTGAAGAAACCAAAGTTTCAAAGCCTCTTCCTACTCCTTATAAGGATGGTTGTTGTCTTAAAATGGCATCGGTGTCTAGTCAGCCGCAGTTCCGTTACACTCAGCCGCCGTCAAAGGTGCTTCATTTGAGAAACTTGCCATGGGAGTGCACAGAGGAGGAACTTGTTGAACTTGGAAAGCCATTTGGGAAGGTTGTGAACACAAAATGCAACGTAGGAGCAAATCGAAATCAAGCGTTCATTGAATTTGCAGATTTAAATCAAGCTATTGCAATGATATCATACTATGCATCATCTTCGGAGCCGGCTCAAGTACGGGGGAAAACTGTATATCTGCAATATTCAAATAGGCAAGAAATAGTGAATAACAAAACCGCTGCAGATGTTCCTGGGAATGTATTGTTGGTGACAATTGAGGGTGCGGATGCACGCCTAGTCAGCATTGATGTTTTGCACTTGGTATTTTCAGCCTTTGGGTTTGTGCATAAGATTACTACTTTTGAGAAGACAGCAGGATTCCAGGCCCTGGTGCAATTCTCAGATGCAGAGACTGCCACATCTGCTAAGGATGCTTTGGATGGAAGAATAATTCCTAGGTATCTGCTCCCTGAGAATGTGGGGCCATGTACCCTTAGGATTACTTATTCTGGACATTCAGATCTAAGTGTTAAGTTTCAGAGCCATAGGAGCAGAGACTACACAAATCCTTACCTTCCTGTTGCTCAGTCAGCTATGGAGGGAAGTGGTCAGGCCGTGGTAGGTTTGGATGGGAAAAGAATAGAGACTGAGAGCAATGTTCTTCTTGCATCTATTGAGAATATGCAATATGCTGTGACATTGGATGTCTTACACATGGTTTTCTCTGCTTTTGGTCCTGTTCAAAAGATTGCAATGTTTGATAAGAATGGTGGTTTACAAGCTCTGATTCAATATCCAGATATACAGACAGCTGTTGTGGCCAAGGAAGCTTTGGAAGGACACTGCATATATGATGGAGGGTTTTGCAAGCTTCACATATCATACTCGCGTCATACTGATCTTAGTATAAAGGTCAACAATGACAGGAGTAGGGATTATACCATTCCCAATACACCAGTGATGAACCCCCAGCCGTCACTCTTAGGGCAACATCCTGTTCCCATGGTTGGTGCCCCTAGTCAACAGTACAATGGGGCTCCACCTCCGGCTCA 2015 0.4471 MVKLASARDFRTYGPGLTRNRYEYINAGLYLFSTVVLSCGFASQFSSEASSGLVVFLIALGLMLIVNFHDLMAHLVPIDFRFQLMAFDPQLAFVEFAVPLFNMLGTLLTFLAVFFIFLQEEKGHGYFKLEKHALNMLVAGPVLWVVGSIHNSCQIYERADGHVQILQQCVYIPFLMGSMLFMISSCLNYIEQSRVIHHGLGLLGRDWIWLGISGTIFFFIGGLINVVKVFKMQQMNGMRLEKLRGGAQEQLIRAREGHVPLLSEHHQIRIRHNPPPEETKVSKPLPTPYKDGCCLKMASVSSQPQFRYTQPPSKVLHLRNLPWECTEEELVELGKPFGKVVNTKCNVGANRNQAFIEFADLNQAIAMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTAADVPGNVLLVTIEGADARLVSIDVLHLVFSAFGFVHKITTFEKTAGFQALVQFSDAETATSAKDALDGRIIPRYLLPENVGPCTLRITYSGHSDLSVKFQSHRSRDYTNPYLPVAQSAMEGSGQAVVGLDGKRIETESNVLLASIENMQYAVTLDVLHMVFSAFGPVQKIAMFDKNGGLQALIQYPDIQTAVVAKEALEGHCIYDGGFCKLHISYSRHTDLSIKVNNDRSRDYTIPNTPVMNPQPSLLGQHPVPMVGAPSQQYNGAPPPA 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00458 671 Gene3D - 407 518 IPR012677 -
Adu08g00458 671 Gene3D - 538 643 IPR012677 -
Adu08g00458 671 CDD RRM2_PTBPH1_PTBPH2 406 500 IPR034793 -
Adu08g00458 671 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 297 666 - -
Adu08g00458 671 SUPERFAMILY RNA-binding domain, RBD 545 640 IPR035979 GO:0003676
Adu08g00458 671 CDD RRM1_PTBPH1_PTBPH2 312 392 IPR034792 -
Adu08g00458 671 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 369 IPR000504 GO:0003723
Adu08g00458 671 Pfam RRM-like domain 539 617 IPR021790 -
Adu08g00458 671 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 2 297 666 - -
Adu08g00458 671 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 405 470 - -
Adu08g00458 671 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 314 392 IPR000504 GO:0003723
Adu08g00458 671 SUPERFAMILY RNA-binding domain, RBD 421 514 IPR035979 GO:0003676
Adu08g00458 671 SMART rrm1_1 543 613 IPR000504 GO:0003723
Adu08g00458 671 SMART rrm1_1 315 388 IPR000504 GO:0003723
Adu08g00458 671 SUPERFAMILY RNA-binding domain, RBD 302 397 IPR035979 GO:0003676
Adu08g00458 671 Gene3D - 301 406 IPR012677 -
Adu08g00458 671 CDD RRM3_PTBPH1_PTBPH2 539 635 IPR034794 -
Adu08g00458 671 MobiDBLite consensus disorder prediction 638 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00458 Adu-Chr8 8223235 8277635 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00458 K14948 - vvi:100855089 1012.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00458 08 8223235 8277635 Adu08g00458 08 8223235 8277635 ECH