Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00409 ATGTCAGCTTCAGCTTCGTTTCTTGCTCCGTCCCCCTCTTTCGCTCCATTCAGGGGTTGCAAAGAGGTTCCACGTATGTTTTCAGTGTCTAACAAAAAGGAGAATCGCACTTCAAAGCTTTACATTATACCCATCACCACTGTTACTCGCTTTTGTGCCTCAACAGCTTCACTTGAGTCCTTGCACTTTGCTGACACTAATGCTAATCAAAATCACAGTACCTTGACTCTGCAAGTTGTGTTCCGCAGAATAAACGAATTTGAGAATGAGTTGAACGAGTTCTTTGATGAAGTGAAAACAATGATTAGAATGGGAAAAAGAGATGATGCTCTTGACCTACTTAATGCCGGCTCTAAAGGCATTCAAGAAGCTGCAATTCTGGATGTCTTAGCGCTGGGTTATGTGGCTGTTGGAGACCTAGAAACTGTTGCTTCTCTGTTGAATGTGATGAGAAAAGTGATTGACAATTTGAAGGATGACACACAACATCTAGATTTGATACTTACGCATATGGGAAGTATGTATTCAACATTGAGCAAGTTTGGAAAATCACTGGACACGTATCAAAGGGCTTTCAACATTATGGAAAGGACCTATGGTAACGACAGCCCTTTTCTTGTCACACCCTATTTGGCTATGGCAAAGGTTCTTGGTTCAACTGGAAAAGCAACAAAAGCCATAGAGAAATACCAGTGTGCAATAACTATTTTGGAGTCTAAGAGAGGTGCTGAAAGTAAGGATTTGGTTGTACCTTTACTTGGTCTTGGCAATCTTTTACTGAAAGAAAGAAGAGTCAACGATGCAGAAACTCATTTTACTAGGGTTCTCGACATATACACAAAGTCATATGGACAAAATGATGGAAGAATTGGATTGGCCATGAGTTCCCTTGCCCAAGTTAAGTGTGCTCAAGGGAAGTCAGATGAAGCAATCAATTTGTATGAACATGCACTTCATGTCATGAAAGATTCCAATTACTTGTCGCCAGATGACAGCATCATGGAAAAGATGAGGGTAGATCTTGCTGAGTTGCTTCATGCTGTCGGGAGAGAGGCACAAAGGAAAAGGTCACCCCGGCTTAGTGACACACATGATAAATCTTGCAACTTCATATTCCCAATCGAAGAATTATGCAGAGGCCGAGCACTTGTTGAGAAGAGTTTGGAAATAATGATAAAGCAGAAAGGAAGCGATGACCAGTTCGTCAGCTTTCCAATGTTGCAACTTGCAGTTACGCTTCACCATTTGAAACAAGATGAAGAAGCTGAGAAACTGGCACTGGATGCTTTGCGCATCCGTGAGAAGGCATTTGGAGAAGATTCTCTTCCAGTTGGGGAGGCTTTTGACTGTTTGGTGTCTATTCAAACTCAAGTTGGTAAAGATGAGAGCGAGTTAGTTGTGCTACTTAGAAGGATTCTAGGAGCTTCCCTCTTCGTCTCCAACCCCTGTTCGCTCTCACCAATCACAACAGAAATGGCTGCCACAGCACCAGCAGAAGCTGGGTCCCAATGGCCATTCAGCTGTGACCTAGAAGTTGATTTTGGACATGAACAAAATGCTGCTATCGTATGCGCAGCCTTAGCTGTTGATAAGGAGTTGCAACCAGACAAGGTGAAACGACTCATGGCAGTGTCTCATGGAAAGCTTTCAGTGCACTTTGAGGCAACGGAAGCAAGATTTCTTCGGGCATCTTTTAGTGCTTTTGTAGATGTCCTTACACTGGCCACAAAAACGATTGAAGAATTTGGTCAAGGAATGGAATTGTGA 1767 0.4278 MSASASFLAPSPSFAPFRGCKEVPRMFSVSNKKENRTSKLYIIPITTVTRFCASTASLESLHFADTNANQNHSTLTLQVVFRRINEFENELNEFFDEVKTMIRMGKRDDALDLLNAGSKGIQEAAILDVLALGYVAVGDLETVASLLNVMRKVIDNLKDDTQHLDLILTHMGSMYSTLSKFGKSLDTYQRAFNIMERTYGNDSPFLVTPYLAMAKVLGSTGKATKAIEKYQCAITILESKRGAESKDLVVPLLGLGNLLLKERRVNDAETHFTRVLDIYTKSYGQNDGRIGLAMSSLAQVKCAQGKSDEAINLYEHALHVMKDSNYLSPDDSIMEKMRVDLAELLHAVGREAQRKRSPRLSDTHDKSCNFIFPIEELCRGRALVEKSLEIMIKQKGSDDQFVSFPMLQLAVTLHHLKQDEEAEKLALDALRIREKAFGEDSLPVGEAFDCLVSIQTQVGKDESELVVLLRRILGASLFVSNPCSLSPITTEMAATAPAEAGSQWPFSCDLEVDFGHEQNAAIVCAALAVDKELQPDKVKRLMAVSHGKLSVHFEATEARFLRASFSAFVDVLTLATKTIEEFGQGMEL 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00409 588 Pfam Transcription factor Pcc1 507 580 IPR015419 -
Adu08g00409 588 Gene3D Tetratricopeptide repeat domain 101 368 IPR011990 GO:0005515
Adu08g00409 588 Gene3D - 498 586 - -
Adu08g00409 588 PANTHER GEO08993P1 498 586 - -
Adu08g00409 588 Pfam Tetratricopeptide repeat 167 239 - -
Adu08g00409 588 Pfam Tetratricopeptide repeat 253 320 - -
Adu08g00409 588 Gene3D Tetratricopeptide repeat domain 377 476 IPR011990 GO:0005515
Adu08g00409 588 Coils Coil 84 104 - -
Adu08g00409 588 SMART tpr_5 165 198 IPR019734 GO:0005515
Adu08g00409 588 SMART tpr_5 249 282 IPR019734 GO:0005515
Adu08g00409 588 SMART tpr_5 403 436 IPR019734 GO:0005515
Adu08g00409 588 SMART tpr_5 291 324 IPR019734 GO:0005515
Adu08g00409 588 SMART tpr_5 207 240 IPR019734 GO:0005515
Adu08g00409 588 PANTHER EKC/KEOPS COMPLEX SUBUNIT PCC1 FAMILY MEMBER 498 586 IPR015419 -
Adu08g00409 588 SUPERFAMILY TPR-like 168 433 IPR011990 GO:0005515
Adu08g00409 588 Pfam Tetratricopeptide repeat 407 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00409 Adu-Chr8 7299291 7304524 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00409 - - aprc:113852595 543.888
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00409 08 7299291 7304524 Adu08g00409 08 7299291 7304524 ECH