Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00408 ATGGATAGGTCTAGATCTAAGAGGAACTACTACTATGACCAGGACTATGATTCTGACACCCTCGCTAGGATCAGGCCCCGCTATAACCACCACTATAACAACGTTCCAGTTCACCGCCACCGCGGAGGAGGAGGTGGTGGTGGCGGCGGCGGCGGCGGAGGACGCCAGTTTAAGACTCAGGACTCGCCGTTGACGGTTACCACCAGCTACCGCATTCTGTGCCACGATTTGAAGGCCGGCGGCGTCATCGGGAAGTCTGGCAGCATAATAAAGTCCATACGGCAGCACACCGGCGCCTGGATCAACGTCCACGAGCTGATCCCCGGTGACGAGGAGCGGATCATCGAGATTTCCGACACTCGCCGCCGCGACCCTGAGGGGAGAATGCCGTCGTTTTCGCCGGCGCAGGAGGCGCTCCTCATGATCCACGACAGGATCCTGGAGAGCGACGCTGCGTTCGGGGTCGGAGAGGAGGATGAGGAGTACGGCCTCCCTGGCGGAGGAGGCGGAAGAGGTGGTGGTGGTGGCGGGAACAGTCGAGTGGCCTCGAGATTGGTGGTATCGAGAATGCATGTAGGGTGTTTGTTGGGAAAAGGAGGGAAGATTATTGAACAAATGAGGATGGAAACAAAGACACAAATTAGGATACTCCCTAGAGATCACAATCTACCCCGTTGTGTTTCCATGGCAGAAGAGATTGTTCAGGTAGTAGGTGACGTAAATGCTGTGAAGAATGCTATAGTAATTATATCATCGCGGTTAAGGGAGAGCCAGCATCGTGACCGTGGTCATTTCCATGGACGTGCACATTCGCCTGAGCGATTTTTCTCTCCCGACGATGATTATGTTCCTCACATGACTGGTGGATCTCGTAGATCAGCTGTAGATGGAGCTAATTTTGGTTCACGAATGTCTAACACCAATGCCAGAAACAATAACCAACCCCAATTGGGTAATTACGGAATGGAGCCAGGGCCTGCTCCCATGGTTGATGAAGCACAGCCCCTGTATGGAGAGGAGCTTGTTTTCCGTATACTTTGTCCAGTTGAGAAAGTTGATCGCATTATTGGGGAATCAGATGGAATTGTAGAGTTCCTTCAAAATGAAGTTGGGGTAGATGTAAAGGTGGCCGAACCTATTGGTGGTTCAGATGAACAGATAATAATCATTACTTCAGAGGAGGGTCCTGATGATGAGCTGTTCCCAGCACAGGAAGCCTTGTTGCATATACAAACTCGTATTGTTGATCTTGTTCTAGATAAGGACAATACTATAACCACCAGGCTCGTCGTCCCATCTAGCGATATTGAATGCATAGATGGAAAAGAGGCCTCACTATCAGAAATAAGGAGGTTGACCGGTGCAAACATTCAGATTCTGCCTAGAGAAGAATTACCTCTTTGTGTTGCAAGAACTGATGAGCTAGTACAGATTGTAGGAGAGATAAAGGCAGCACGAGATGCTGTTGTTGAGGTGACATCAAGATTAAGAAGTTACTTTTATAAGGACTTCTTTTCAAGAGATACAATGCCACCGTTGACCTCCTTATCGGGCATTGAGGCATCTTCTTCTAATAATATGGCTTCAGCTACTGAAGCTCCTGCAGCCTATCAGAATGTGCTAACTGCACCAGGACCCTTTCCATCAAAGGAATCTGGAGGGTCTAGCACCGAGGCAGGAAAGCAGAAAGAGACTGACCGCCGCGAAGACGTGCCGAGTGGTTTAAATAGGATTACTGTGCCTCTTGTCACAAGGAGTACACTTGAAGTTGTTCTACCAGAGTATGCAGTTCCCAAGCTTATAGCAAAATCCAAAAGCAAGCTTGTTCAAATAAGTGAGTTGTCAGGAGCCAACGTAACGCTTGTAGAGGATAGACCAGATGCGACACAGAAGATTATTCAGATATCCGGTACTCCAGAGCAGGCAGAGAGAGCGCAGAGCTTGCTCCAGGGATTTATTTTGAGCACACAAGAAGACGGCCCTTGA 1986 0.4924 MDRSRSKRNYYYDQDYDSDTLARIRPRYNHHYNNVPVHRHRGGGGGGGGGGGGGRQFKTQDSPLTVTTSYRILCHDLKAGGVIGKSGSIIKSIRQHTGAWINVHELIPGDEERIIEISDTRRRDPEGRMPSFSPAQEALLMIHDRILESDAAFGVGEEDEEYGLPGGGGGRGGGGGGNSRVASRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMAEEIVQVVGDVNAVKNAIVIISSRLRESQHRDRGHFHGRAHSPERFFSPDDDYVPHMTGGSRRSAVDGANFGSRMSNTNARNNNQPQLGNYGMEPGPAPMVDEAQPLYGEELVFRILCPVEKVDRIIGESDGIVEFLQNEVGVDVKVAEPIGGSDEQIIIITSEEGPDDELFPAQEALLHIQTRIVDLVLDKDNTITTRLVVPSSDIECIDGKEASLSEIRRLTGANIQILPREELPLCVARTDELVQIVGEIKAARDAVVEVTSRLRSYFYKDFFSRDTMPPLTSLSGIEASSSNNMASATEAPAAYQNVLTAPGPFPSKESGGSSTEAGKQKETDRREDVPSGLNRITVPLVTRSTLEVVLPEYAVPKLIAKSKSKLVQISELSGANVTLVEDRPDATQKIIQISGTPEQAERAQSLLQGFILSTQEDGP 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00408 661 Gene3D - 339 500 - -
Adu08g00408 661 Gene3D K Homology domain, type 1 584 656 IPR036612 GO:0003723
Adu08g00408 661 CDD PCBP_like_KH 184 251 - -
Adu08g00408 661 Gene3D K Homology domain, type 1 64 179 IPR036612 GO:0003723
Adu08g00408 661 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 3 540 - -
Adu08g00408 661 CDD KH-I 587 650 - -
Adu08g00408 661 MobiDBLite consensus disorder prediction 540 572 - -
Adu08g00408 661 MobiDBLite consensus disorder prediction 260 280 - -
Adu08g00408 661 SMART kh_6 66 147 IPR004087 GO:0003676
Adu08g00408 661 SMART kh_6 179 255 IPR004087 GO:0003676
Adu08g00408 661 SMART kh_6 584 654 IPR004087 GO:0003676
Adu08g00408 661 SMART kh_6 339 412 IPR004087 GO:0003676
Adu08g00408 661 SMART kh_6 423 497 IPR004087 GO:0003676
Adu08g00408 661 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 177 260 IPR036612 GO:0003723
Adu08g00408 661 ProSiteProfiles Type-1 KH domain profile. 585 649 - -
Adu08g00408 661 Gene3D K Homology domain, type 1 180 259 IPR036612 GO:0003723
Adu08g00408 661 ProSiteProfiles Type-1 KH domain profile. 340 407 - -
Adu08g00408 661 MobiDBLite consensus disorder prediction 260 282 - -
Adu08g00408 661 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 417 504 IPR036612 GO:0003723
Adu08g00408 661 CDD PCBP_like_KH 69 143 - -
Adu08g00408 661 ProSiteProfiles Type-1 KH domain profile. 180 250 - -
Adu08g00408 661 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 332 398 IPR036612 GO:0003723
Adu08g00408 661 ProSiteProfiles Type-1 KH domain profile. 67 139 - -
Adu08g00408 661 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 578 655 IPR036612 GO:0003723
Adu08g00408 661 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 65 118 IPR036612 GO:0003723
Adu08g00408 661 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN RCF3 3 540 - -
Adu08g00408 661 MobiDBLite consensus disorder prediction 33 61 - -
Adu08g00408 661 Pfam KH domain 70 118 IPR004088 GO:0003723
Adu08g00408 661 Pfam KH domain 587 650 IPR004088 GO:0003723
Adu08g00408 661 Pfam KH domain 426 491 IPR004088 GO:0003723
Adu08g00408 661 Pfam KH domain 184 251 IPR004088 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00408 Adu-Chr8 7293342 7298383 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00408 K21444 - gmx:100804167 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00408 08 7293342 7298383 Adu08g00408 08 7293342 7298383 ECH