Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g00170 ATGTCCTCTGATTCTGAATTCACAATTCACAATTCCCAATCCAACAATATTCCTTACTCCAATTCTGCATCATATCATCAAAACTGCAACCCTAGGGTGATCTCTCCTTCGCCGTGCTGCTTACAATCAGAATCAGCAATGCATCAAGGAGATTACACCTCCGCTCCATATTATCAATTCCCACACCTCCAAAACCCTAATCCCAACCCCTCCAATCTATACGCTTCCGCACCCCCCGTCACACCCGACCTCCCCTCATTCAATTCCACCTTCAATTCTCACCCTTCGTACCATCAACCACCTTCGCAGAACCAGCCCTATTTCCCGCCCTATGATCAGCATCAAACCACTCCGAATTACGCCCCTCCTCCAACCTCCTCAATTCCCTCTGAGTCCAATCCCAGTTCCTCGTACTCCTCTTTGTACAATTCGGCACCGTACACTCACGCCGGAGCTTCCGTTCCTCCGGTTCCCTCATACGATAGCCCTTACCAGAATCCAGTGAAAGCCGATCACGGCAGTGCATATTTTGACGATTTCGGAGGCCTTAATCGGAGCCGTTCAGAATTGGGATCAGTTTCGAGCTACGATGAAGGCTATGGTGATGGTGTGTATGCTTATGAAGGGGGCAAGGTGGAGCCCTACGGTGCGCGTGGCACAGCTCCTAAATCTTCGACGTGGTCCTCAACCACGTTCGATGATTATGGAAGGTCCATCAGTTTTCCCTCTCAGAATGAATCTTCTTCTGTCTCAAGTAAGATCGTGAAAGCGGTGCCAAAAGCTGATGCCCAAGAAGATGGAAAAACTGGGGTGCAAAAGTTCAGGGTCAAGTTGCTGGCAGAAAGTGGTGGCCAGAGCGCTACAGATGTTCTATGCCAGATTGGTTTGGATGGAATCCGCATGCTAGATCCAAATACAAGTCGGACATTGAGAATATATCCACTTGAGAACATAACAGGATGTGATAGACTTGACTCATCTACCTTTGCATTTTGGTCAAAGAGCCCAGTGGACATTGAACCAAGACGAATCAGATTGCAATCCAATAGCTACACTATAAACACACTTTTGGATACAGTGATTGCTGCAACCATACAGTTCAAGGAAATGAATGGAAGCAGCAGGAGGCCTCCTGAGGCATTGAAAGCAAATGAACAGCCTACAGAAAGAAAGAAAGGCTTTGGCGATTGGATGAATCTGATAAAGCCTGCCAATGAAGAGAAGGATCACTGGGTCCCAGATGAAGCAGTTTCAAAATGCAAAGATTGTCAGACTGATTTTGGGGCTTTTAATCGCAAGCATCATTGTAGGAACTGTGGTGATATTTTCTGTGACAAATGTACACAAGGTAGAATTGCTTTAACTGCCGATGCGAATGCTCAGCCAGTACGTGTTTGTGATAGATGCATGGCGGAAGTGACCCAAAGGCTGAGTAGTGCTAAAGAGTTATCAAGTAAACCTGTGTTACAGAGTCATGAGGATCTTGCCAGGAAGCTTCAGGAGGAGCTGCAGAGAAACCAAAAGACATCAGGTTCGACCTCTGGAGGATCTGGAAGACGGACAAGGGAAGTTGCATGTCCCATTTGCACTGTCCATCTGCAGGTTCAGGTGCCAAGCTCAGGTTCAGAAACCATTGAATGTGGAGTTTGCCAGCACCCATTTCTTGTGAGTGCGCATCGAGTCTGA 1686 0.4721 MSSDSEFTIHNSQSNNIPYSNSASYHQNCNPRVISPSPCCLQSESAMHQGDYTSAPYYQFPHLQNPNPNPSNLYASAPPVTPDLPSFNSTFNSHPSYHQPPSQNQPYFPPYDQHQTTPNYAPPPTSSIPSESNPSSSYSSLYNSAPYTHAGASVPPVPSYDSPYQNPVKADHGSAYFDDFGGLNRSRSELGSVSSYDEGYGDGVYAYEGGKVEPYGARGTAPKSSTWSSTTFDDYGRSISFPSQNESSSVSSKIVKAVPKADAQEDGKTGVQKFRVKLLAESGGQSATDVLCQIGLDGIRMLDPNTSRTLRIYPLENITGCDRLDSSTFAFWSKSPVDIEPRRIRLQSNSYTINTLLDTVIAATIQFKEMNGSSRRPPEALKANEQPTERKKGFGDWMNLIKPANEEKDHWVPDEAVSKCKDCQTDFGAFNRKHHCRNCGDIFCDKCTQGRIALTADANAQPVRVCDRCMAEVTQRLSSAKELSSKPVLQSHEDLARKLQEELQRNQKTSGSTSGGSGRRTREVACPICTVHLQVQVPSSGSETIECGVCQHPFLVSAHRV 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g00170 561 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 414 474 IPR017455 -
Adu08g00170 561 Pfam FYVE zinc finger 410 474 IPR000306 GO:0046872
Adu08g00170 561 MobiDBLite consensus disorder prediction 58 101 - -
Adu08g00170 561 CDD PTB 275 331 - -
Adu08g00170 561 SUPERFAMILY FYVE/PHD zinc finger 409 485 IPR011011 -
Adu08g00170 561 PANTHER PROTEIN FREE1 14 559 - -
Adu08g00170 561 MobiDBLite consensus disorder prediction 58 140 - -
Adu08g00170 561 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 479 IPR013083 -
Adu08g00170 561 SMART fyve_4 406 475 IPR000306 GO:0046872
Adu08g00170 561 SUPERFAMILY PH domain-like 271 336 - -
Adu08g00170 561 Coils Coil 489 509 - -
Adu08g00170 561 PANTHER PROTEIN FREE1 14 559 IPR045893 GO:0036258|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g00170 Adu-Chr8 2621927 2625925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g00170 392 487 EF-hand Containing Proteins AT3G14270 33.043 3.15e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g00170 - - ahf:112705657 1040.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g00170 08 2621927 2625925 Adu08g00170 08 2621927 2625925 ECH