Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g03017 ATGCAATCCTATCTCTTGTATTCAGGCATATCTGTCCTTGCCATGGCTGATGATGATGATTCCCCTAGTATAGGGGACACAATATGTAAAGTTTTGATGCCATTCATGGCTGTGGTTGAAGTATTCATGATTGCTGTGGCTAATTGTTTCAACTATCAATCAAGATGCATTGGTAAAAATCAGAAACCTTACTACAATTATGAGGATCTCGCTCGCCTTGCTCAAGGAACCAGATTTACTGTTAATGAAGTGGAGGCATTGTATGTGCTGTTTAAGAGGTTAAGTAGCTCCATAATTGATGATGGTTTGATTCACAAGGAGGAACTTCAATTGGCTCTATTCCAAACTCCTAATGGAGAAAATTTTTTCCTAGATCGAGTATTTGACCTTTTTGACGAGAAAAGCAAGGGTGTTATCGACTTTGACGAATTTGTCCACACGCTCAGTATTTTCCATCCTTATGCTCCTCTAGAAGAAAAAATTGATTATGCATTTAAGCTTTATGATATACGAAAAACTGGATTTATCGAGCGAGAAGAACTCAAGCAAATGGTGAAAGCCATGTTGATGGAATCTGACATGAACCTTTCGGACGATCTTCTTGAAGCTATTGTTGACAAGACAATTGCTGATGCCGATAAGGATAAGGATGGTAAAATCAGTAAAGAAGATTGGAAAGTTTTTGTGAGTAGAAATCCATCCATATTGAAGAACATGACACTTGCTTATTTGAAGGACATCGCATGTATATTTCCAAGTTTTATTTTCAAATCAGATGCTGAAATTTGA 789 0.3714 MQSYLLYSGISVLAMADDDDSPSIGDTICKVLMPFMAVVEVFMIAVANCFNYQSRCIGKNQKPYYNYEDLARLAQGTRFTVNEVEALYVLFKRLSSSIIDDGLIHKEELQLALFQTPNGENFFLDRVFDLFDEKSKGVIDFDEFVHTLSIFHPYAPLEEKIDYAFKLYDIRKTGFIEREELKQMVKAMLMESDMNLSDDLLEAIVDKTIADADKDKDGKISKEDWKVFVSRNPSILKNMTLAYLKDIACIFPSFIFKSDAEI 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g03017 262 SMART efh_1 123 151 IPR002048 GO:0005509
Adu06g03017 262 SMART efh_1 160 188 IPR002048 GO:0005509
Adu06g03017 262 SMART efh_1 204 232 IPR002048 GO:0005509
Adu06g03017 262 ProSitePatterns EF-hand calcium-binding domain. 213 225 IPR018247 -
Adu06g03017 262 PANTHER CALCINEURIN B 19 261 IPR045198 GO:0005509|GO:0019722|GO:0019900
Adu06g03017 262 Gene3D - 69 262 - -
Adu06g03017 262 SUPERFAMILY EF-hand 70 254 IPR011992 -
Adu06g03017 262 PRINTS Recoverin family signature 65 79 - -
Adu06g03017 262 PRINTS Recoverin family signature 127 148 - -
Adu06g03017 262 PRINTS Recoverin family signature 174 192 - -
Adu06g03017 262 PRINTS Recoverin family signature 220 240 - -
Adu06g03017 262 ProSiteProfiles EF-hand calcium-binding domain profile. 119 154 IPR002048 GO:0005509
Adu06g03017 262 ProSiteProfiles EF-hand calcium-binding domain profile. 156 191 IPR002048 GO:0005509
Adu06g03017 262 CDD EFh 160 230 IPR002048 GO:0005509
Adu06g03017 262 ProSiteProfiles EF-hand calcium-binding domain profile. 200 235 IPR002048 GO:0005509
Adu06g03017 262 Pfam EF-hand domain pair 158 224 IPR002048 GO:0005509
Adu06g03017 262 PANTHER CALCINEURIN B-LIKE PROTEIN 10 19 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g03017 Adu-Chr6 108211903 108216829 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g03017 21 208 EF-hand Containing Proteins AT4G33000 60.638 2.30e-81 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g03017 K06268 - nnu:104586607 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g03017 06 108211903 108216829 Adu06g03017 06 108211903 108216829 ECH