Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g03001 ATGTGTGAGTGCCCTGATTTTTTTCCAGTTTTAATTGATGGTACAAAGCATGGGGTTGATTTAGATTCTTCTTCAGTTCAAGATTCTAATGATGTTATTAGGCATGTGTTGAAGATAAGTTACCAAAATAAACAGCAAGAACATTATTTGGTAGGTAAGTATGTTTGTGATGAGGACAAGTTTGTTGCTGAGAATAAAATTACAGGGACTAGTTTGGACTTGAAATTGGACCATGGTGAATTTTATGCTTCAAAATCATTCTTTGACTATGCCAAGAAGAGAAGGGTATTATGGGGATGGGTTAAAGAGCTTGATACAGAACAAGATGATATTCTTAAAGGATGGGCTGGTCTACAGGGCATTCCAAGGCAAGTGTGGCTTCATGAAAATGGGAAGTGGCTGATGCAGTGGCCAATAGAAGAGTTAGAGACACTTAGATACTCCGACAATGAAGTTAGTATTTTGGGACACAAACTTGTTGCTGGATCAACTCTTCAAGTCTCAGGTATCACTGCATCACAGGCTGATGTAGAAGTAGTGTTTGAACTACCTGAACTGGAAAGTGCAGAATGGTTAGATTCAAAAGAAGTTGATCCCCAAATAGTGTGTAGTGATAAAGAATATGCATCAAGAAGTGGCATAATAGGCCCATTTGGTTTACTGGCTTTAGCTTCAAAGGATCTTACAGAGCAAACTGCAATTTTCTTCACAATCTTTAGAACTTCCAATGGATTTTCATGTCTCATGTGCACTGATCTTACCAGGTCTTCATTGAGGCAAGACGTTCATAAAACCACATATGCAACTATCTTTGCCATAGATTCCAATCTCAAAGCAATTTCACTTAGAACCTTGATTGATGGGTCGATTATAGAGAGTTTTGGAGAGAAAGGAAGAGTTTGTATCACAAACAGAGTTTATCCCTTGTTGGCTACTGAAAAGGATGCTCATCTTTATGTCTTTAACAATGGAAAACAGAATGTTTGCATCTCAAAACTAAATGCTTGGAGCATGAAGCCAGCAAAGACTGCCGCCATCCGTCGCGCTCCGGATAACGCAGTCGTCGTCTGGTTGTCTGCTCTTATTCCTCATTCGAGAATCGCACCTTCTTCCTCGAGCTCGACGTCATTCCTTGGTCTTTGTAAGCTCTGTCGCGCTTCTGCTGTCGTCTGTCGCACTCAGGAACCACTGTCTTCGTCTGGTCGTGGTGCTCGAAGTTTTCAACCCACCAATCGCAGCTTCTTCCTCAAGCTGTCTTGGAGTCTACCCTTCGTTTGCTCAGCCGCAGCTCTTCCAACCCACCACTGTCTTCGAGTCGTGCTCGTTGCCTGGCCTTTGTCTCCGTCGCACTTTTGCCCCTCTGCTCAGAGTGCTCAGACATTAGAACGAAGCACTGACGTCACTCTTATCTCCGATACCAATTCAGATTCTACTCCCTTCTCTGTTCGCGCTCGCCCCCTCCGCCACTTGAGCCTGTTCGGTTCCCCTCCGCCGCTGCATTCGTCAACCGGTTCTTCTTCCGTTCCGCCGTTCTGCTTCCCCAGCCGCACTCCTCTCATTCCGCCGCTTGAGAATTCAGCTCCTCTCTATGTTGTTAGAGACTCTTGTATTGATGTGCTTAAACTGACGACTGAGGGTGAGCTTGGTTATGTTCTAAGATATTTACGTGCTGATTCAAAGGGAGAGAGGGAGCCAAAAAAGCATCCAAAATGGAAACGCGCCATTCCCACTCGTGCAGGCTCTGGCGATTTTGGCATTGTAGCAGGAGCCATACCCTCTTTCTCTCACAGTCTCACACACTTTCGTGCATTCACAAGCACGAGGACTGAATCAGCAATAGTAGCAGCAGCAGCATCACCATCACAGGCCCAACCGCTAGCAGAGAAGGAGAAGGAATTGGATAGTTTAGCGAGCGGGGATTCTATACGGCAGAGATTCCTGAAGTTTTATGCTTCCCGCGGCCACAAGGTCCTCCTATATTCCTCGGGAAGGTCTGGCCCTCCCTCATGTTCCAAGGCAAGTACCTTGTGCAACTACTGCACAAAGGTGCATACCTTTGGTGATTACTTCAAAAAGGAAGCAATTGTATGGGCATGGGAGCTTTCAACCAAAGAGTTTGGTTTGCCAGCGGACAGATTGTGGGTTAGTGTTTACGAAGACGATGATGAGGCTTTTGAGCTATGGTCTAATGAGGTGGGTGTCCCATTGGAGCGTATAAAGAGGTTGGGTAAAGAGGACAACTTCTGGACCAGTGGAGTGACAGGTCCCTGTGGTCCCTGCTCGGAACTTTATTATGATTTTCATCCTGAAAGGGGATACTTTGATGCTGATCTTGGTGATGATTCGAGGTTTATAGAGTTCTACAATCTAGTATTCATGCAGTACAACAAAAAAGATGATGGTTCCCTTGAACCTCTAAAGCAGAAGAACATAGACACAGGGCTTGGACTAGAACGCATGGCTCGCATCCTTCAAAAGGTTCCAAATAACTATGAAACTGACTTAATATTCCCCATCATAGAGAAGGCCTCTAAATTGGCAAATGTTTCATATGGCACTGCTGACGATCAGACAAAAAGGAATCTGAAGATTATAGGTGATCACATGCGTGCAATTGTATTTCTCATCTCTGATGGTGTTGCCCCATCAAATGTTGGGAGAGGTTATGTGGTTCGACGGCTTATTAGAAGGGTTGTTCGTACAGGCAGGTTGCTTGGTATAAAAGGTGATGGTATGGAAGACCTTGAAGGAGCATTTTTACCAATTATTGCTGAGAAAGTTGTGGAACTAAGCACCAACATTGATTCCGATGTTAGGAGTAGATCACACCATATCTTTGAGGAATTGAAGAGAGAAGAGCTTCGTTTTGTACAAACATTGGAGAGAGGAGAAAAGTTGCTTGAAGAGAAGCTTGCTAATGCTTTGTCAAATGCTGAGCAAAATGGAACTGCACCTTGCTTGACTGGCGAAGACGTATTTCTTTTGTATGATACTTATGGATACCCTGTTGAAATAACAAAAGAAGTGGCTGAAGAACGTGGTGTGAGTGTTGATATAAATAGTTTTGATATGGAGATGGAGAAGCAAAGGCGTCAATCTCAAGCTGCACACAATAGTGTCAAACTTGCCATGGGAAATGGGGCAAATATTGCAGAAATTTTACCTGACACTGAATTTATAGGCTATGACAATCTTTATGCTAAAGCAATTGTACAAAGCCTAGTGATAGATGGTGATCCAGCTGCACAAGTTAGTGAAGGGAGTAACGTGGAAATTTTGCTGAACAAGACTCCATTTTATGCTGAATCAGGGGGACAAATTGGAGATCATGGTTTTATTTATGTTGTAGAGGGTGAAAATCAACCGAGAGCTGTTGTGGAGATAACAGATGTTCAGAAGTCTTTAGGTAACATATTTGTTCACAAGGGTACTGTTCGTAAGGGAGTTGTTGAGGTTGGCAAGGAAGTTGAAGCAGCAGTGGATGTAAAGCTGAGGCAGAGAGCTAAGGACCATCATACTGCTACTCATTTATTACAAGCAGCACTAAAGAAAGTGATTGGTCAAGAAACCTCACAAGCTGGTTCTTTGGTGGCATTTGAACGTTTGAGGTTTGATTTCAACTTCCACCGACCACTTCTTGACAGTGAGCTTGGAGAAATTGAAGGGCTAATCAATGAATGGATTGAAGCAGGAATACTTCTTCAGACCAAAGTGATGCCACTTGCTGATGCAAAGCGTGCTGGAGCTATTGCAATGTTTGGAGAAAAATATGGAGAAGAGGTTCGTGTTGTAGAGGTTCCTGGTGTATCAATGGAACTTTGTGGCGGAACTCATGTCAGTAATACTTCTGAAATTCGTGGTTTTAAGATAATATCAGAGCAGGGTATTGCTTCTGGAATCAGGCGTATAGAAGCTGTTGCTGGGGGAGCTTTTATTGAATATGTCAATGCTCGAGATATTTATCTGAAGCAGTTATGTTCCACTCTCAAAGTTAAACCCGAAGAAGTGGTGACGAGGATAGAAAACCTTCTAGAAGAGTTGCGAGCAGTCAGAAATGAAAATTCTGCCTTGCGTGCCAAAGCCGCAGTCTACAAGGCTTCGGTTATTGCCGGCAAAACTTTGTTGGTGGGAAAATCAGAACAGTACAGGGTGCTGGTTGAGTGCTTGGACGATACTGATCCTGAGTCACTTAAAAGTGCTGCGGAATATTTAATGGAAACATTACCAGATCCAACAGCCATTGTACTGGGCTCGTGCCCAGGTGAAGGGAAGGTTAGTCTGGTGGCTGCTTTTACTCCGGGGGTCGTCAATCTGGGGATTCAAGCTGGTAAATTTATTGGACAGATAGCAAAATTATGTGGCGGTGGCGGCGGAGGAAGGCCCAATTTTGCCCAGGCTGGTGGGAGGAAACCTGAAAACCTGGTGTCTGCCCTCGAGAAGGCTCAGGCTGACCTCATAGCCACTCTATCTGAAAAAGGAAACTGA 4485 0.4408 MCECPDFFPVLIDGTKHGVDLDSSSVQDSNDVIRHVLKISYQNKQQEHYLVGKYVCDEDKFVAENKITGTSLDLKLDHGEFYASKSFFDYAKKRRVLWGWVKELDTEQDDILKGWAGLQGIPRQVWLHENGKWLMQWPIEELETLRYSDNEVSILGHKLVAGSTLQVSGITASQADVEVVFELPELESAEWLDSKEVDPQIVCSDKEYASRSGIIGPFGLLALASKDLTEQTAIFFTIFRTSNGFSCLMCTDLTRSSLRQDVHKTTYATIFAIDSNLKAISLRTLIDGSIIESFGEKGRVCITNRVYPLLATEKDAHLYVFNNGKQNVCISKLNAWSMKPAKTAAIRRAPDNAVVVWLSALIPHSRIAPSSSSSTSFLGLCKLCRASAVVCRTQEPLSSSGRGARSFQPTNRSFFLKLSWSLPFVCSAAALPTHHCLRVVLVAWPLSPSHFCPSAQSAQTLERSTDVTLISDTNSDSTPFSVRARPLRHLSLFGSPPPLHSSTGSSSVPPFCFPSRTPLIPPLENSAPLYVVRDSCIDVLKLTTEGELGYVLRYLRADSKGEREPKKHPKWKRAIPTRAGSGDFGIVAGAIPSFSHSLTHFRAFTSTRTESAIVAAAASPSQAQPLAEKEKELDSLASGDSIRQRFLKFYASRGHKVLLYSSGRSGPPSCSKASTLCNYCTKVHTFGDYFKKEAIVWAWELSTKEFGLPADRLWVSVYEDDDEAFELWSNEVGVPLERIKRLGKEDNFWTSGVTGPCGPCSELYYDFHPERGYFDADLGDDSRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERMARILQKVPNNYETDLIFPIIEKASKLANVSYGTADDQTKRNLKIIGDHMRAIVFLISDGVAPSNVGRGYVVRRLIRRVVRTGRLLGIKGDGMEDLEGAFLPIIAEKVVELSTNIDSDVRSRSHHIFEELKREELRFVQTLERGEKLLEEKLANALSNAEQNGTAPCLTGEDVFLLYDTYGYPVEITKEVAEERGVSVDINSFDMEMEKQRRQSQAAHNSVKLAMGNGANIAEILPDTEFIGYDNLYAKAIVQSLVIDGDPAAQVSEGSNVEILLNKTPFYAESGGQIGDHGFIYVVEGENQPRAVVEITDVQKSLGNIFVHKGTVRKGVVEVGKEVEAAVDVKLRQRAKDHHTATHLLQAALKKVIGQETSQAGSLVAFERLRFDFNFHRPLLDSELGEIEGLINEWIEAGILLQTKVMPLADAKRAGAIAMFGEKYGEEVRVVEVPGVSMELCGGTHVSNTSEIRGFKIISEQGIASGIRRIEAVAGGAFIEYVNARDIYLKQLCSTLKVKPEEVVTRIENLLEELRAVRNENSALRAKAAVYKASVIAGKTLLVGKSEQYRVLVECLDDTDPESLKSAAEYLMETLPDPTAIVLGSCPGEGKVSLVAAFTPGVVNLGIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKPENLVSALEKAQADLIATLSEKGN 1494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g03001 1494 SUPERFAMILY ThrRS/AlaRS common domain 1160 1318 IPR018163 GO:0000166
Adu06g03001 1494 Gene3D - 1232 1285 - -
Adu06g03001 1494 SUPERFAMILY Concanavalin A-like lectins/glucanases 138 340 IPR013320 -
Adu06g03001 1494 PRINTS Alanyl-tRNA synthetase signature 887 900 IPR002318 GO:0000166|GO:0005737
Adu06g03001 1494 PRINTS Alanyl-tRNA synthetase signature 785 796 IPR002318 GO:0000166|GO:0005737
Adu06g03001 1494 PRINTS Alanyl-tRNA synthetase signature 863 879 IPR002318 GO:0000166|GO:0005737
Adu06g03001 1494 PRINTS Alanyl-tRNA synthetase signature 812 825 IPR002318 GO:0000166|GO:0005737
Adu06g03001 1494 PANTHER ALANYL-TRNA SYNTHETASE 684 1482 - -
Adu06g03001 1494 SMART glyco_32 1 298 IPR001362 GO:0004553|GO:0005975
Adu06g03001 1494 PANTHER ALANINE--TRNA LIGASE, MITOCHONDRIAL 684 1482 - -
Adu06g03001 1494 Hamap Alanine--tRNA ligase [alaS]. 686 1489 IPR023033 GO:0004813
Adu06g03001 1494 Gene3D - 1377 1485 - -
Adu06g03001 1494 SUPERFAMILY Translation proteins 1054 1160 IPR009000 -
Adu06g03001 1494 Gene3D - 151 338 - -
Adu06g03001 1494 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 1261 1304 IPR012947 GO:0004812|GO:0005524|GO:0043039
Adu06g03001 1494 SUPERFAMILY Arabinanase/levansucrase/invertase 1 139 IPR023296 -
Adu06g03001 1494 SUPERFAMILY Class II aaRS and biotin synthetases 639 831 IPR045864 -
Adu06g03001 1494 Coils Coil 957 977 - -
Adu06g03001 1494 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 684 1317 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Adu06g03001 1494 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 832 1039 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Adu06g03001 1494 Gene3D - 1308 1369 - -
Adu06g03001 1494 Coils Coil 1340 1360 - -
Adu06g03001 1494 TIGRFAM alaS: alanine--tRNA ligase 684 1468 IPR002318 GO:0000166|GO:0005737
Adu06g03001 1494 Pfam tRNA synthetases class II (A) 684 1162 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Adu06g03001 1494 Pfam DHHA1 domain 1341 1483 IPR003156 GO:0003676
Adu06g03001 1494 Gene3D - 1171 1306 - -
Adu06g03001 1494 CDD AlaRS_core 640 827 - -
Adu06g03001 1494 Gene3D Bira Bifunctional Protein; Domain 2 679 827 IPR045864 -
Adu06g03001 1494 Pfam Glycosyl hydrolases family 32 N-terminal domain 1 138 IPR013148 -
Adu06g03001 1494 SMART tRNA_SAD_4 1261 1304 IPR012947 GO:0004812|GO:0005524|GO:0043039
Adu06g03001 1494 Gene3D Glycosyl hydrolase domain; family 43 1 150 IPR023296 -
Adu06g03001 1494 Pfam Glycosyl hydrolases family 32 C terminal 141 337 IPR013189 -
Adu06g03001 1494 Gene3D - 1079 1160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g03001 Adu-Chr6 108033706 108046287 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g03001 1 344 Glycoside Hydrolase AT3G13790 48.286 1.30e-99 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g03001 K01872 - gmx:100788288 1370.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g03001 06 108033706 108046287 Adu06g03001 06 108033706 108046287 ECH