Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02809 ATGTTCGGAGGTATAGTGATGAATCATTCCATCAGAACCAAGCTTTCACGTGCAATTACCAACTTAGCCCTCCAACTCCCTTCTTATACCTCCGAACGCAGACTAGCAGAACAAACCTGCTTGACCCTCCTTCATTCTTGCAACACTCTCACCAACCTCACACAAATCCACACCATCATCCTCAAATTGGGTCTCCATAACAACCCTCTTGTTCTCACCAAGTTCGCTTCAACATCTTCTGATCTCAATGCCATTCACTATGCTTCTTCATTCCTATTCTCCCCCTCTAATAATAATAACAATCTCTTATTGTATGATGCATTCTTGTTTAACACTGTTATCAGGGCTTATGCTCAAACGGCTGGCTCAAAGTTTAAGGCTCTGGAGTTTTACAAAACCATGTTTAGCTATGGCGTTTTGCCAAATAAGTTCACGTACCCTTTTGTGCTCAAGGCGTGTGCTGGCATTGGTGACTTGAATTTGGGGAAAATGGTTCATGGATCTTTGGTGAAGTTTGGTTTTGATGATGATCGTCATGTACAGAACACTATGATTCACATGTATTGTTGTTGTGGGGAAGGGGTTGAGTTTGCTCGGAAGGTGTTTGATGAAAGTCCCAAGATTGATTCCGTTACTTGGAGTGCTATGATTGGTGGATATGCGCGTCTCGGGCGGTCTATGGAAGCTGTTGGATTGTTTAGGGAAATGCAGGTTAAGGGTGTTGTATCTGACGATGTCACCATTGTTTGTGTGTTGTCTGCTTGTACCGATTTGGGTGCACTTGAGCTTGGGAAGTGGTTAGAGTCTTATGTTGAGAGGAAGAAAATACCAAAGTCAGTGGAGCTCTGCAATGCTTTGATAGACATGTTTGCAAAGTGTGGTGATGTTGACAAAGCTCTGGAACTGTTTAGACAAATGAGTTTTCGCACTATAGTTTCATGGACTTCGGTGATTGTTGGTTTGGCAATGCATGGCCGCGGCTTAGAGGCTGTTTCGTTGTTTAATATGATGATTGAGCAAAGGGTGGCACCTGATGATGTTGCATTTATTGGGGTCCTCTCTGCTTGTAGCCACTCCGGGCTGGTCAATAAAGGACATTACTATTTCAATTCAATGGAGAAGAACTTCAGCATTGTGCCAAAGATTGAACATTATGGATGTATGGTGGATCTGTTAAGTAGAGCTGGACTTGTCAAGGAGGCTTTGGAATTTGTTCAAAAAATGCCTATTAACCCAAACCAAATCATCTGGAGAAGCATAATCACTGCTTGTCATGCTCGTGGTGAGTTCAAGCTTGGAGAGAGCATCTCAAAAAAACTTATCAGAAGTGAGCCAATGCAAGAGTCTAACTATGTACTGCTTTCAAACATTTACGCAAAATTGCTTCGCTGGGAGAAAAAGACCAAGGTTAGAGAGATGATGGATTTGAAAGGGATGAAGAAGATCCCAGGAAGCACCATGATTGAACTGAATAATGAGATGTATGAGTTTGTCGCTGGAGATAAGTCACATAATCAGTCGAAACAAATATATGAAATGATGGACGAGATGGGAAGGGAGATAAAGAGGGCTGGCTATGTGCCTACAACCTCACAGGTATTGCTTGACATTGATGAAGAAGACAAAGAAGATGCTTTGTATAGACACAGTGAAAAAATTGCCATAGCTTTTTCTCTTTTGAATACACCCCCTGGCACACCCATTAGACTCGTGAAAAACTTGCGTGTCTGTGAAGATTGTCATTCTGCTACTAAGTTCATATCTAAGGTTTATAACAGAGAGATTGTGGTGAGAGACCGCAATCGGTTCCACCATTTCAAGAATGGTGTGTGCTCCTGTAAAGACTTCTGGTGA 1854 0.4223 MFGGIVMNHSIRTKLSRAITNLALQLPSYTSERRLAEQTCLTLLHSCNTLTNLTQIHTIILKLGLHNNPLVLTKFASTSSDLNAIHYASSFLFSPSNNNNNLLLYDAFLFNTVIRAYAQTAGSKFKALEFYKTMFSYGVLPNKFTYPFVLKACAGIGDLNLGKMVHGSLVKFGFDDDRHVQNTMIHMYCCCGEGVEFARKVFDESPKIDSVTWSAMIGGYARLGRSMEAVGLFREMQVKGVVSDDVTIVCVLSACTDLGALELGKWLESYVERKKIPKSVELCNALIDMFAKCGDVDKALELFRQMSFRTIVSWTSVIVGLAMHGRGLEAVSLFNMMIEQRVAPDDVAFIGVLSACSHSGLVNKGHYYFNSMEKNFSIVPKIEHYGCMVDLLSRAGLVKEALEFVQKMPINPNQIIWRSIITACHARGEFKLGESISKKLIRSEPMQESNYVLLSNIYAKLLRWEKKTKVREMMDLKGMKKIPGSTMIELNNEMYEFVAGDKSHNQSKQIYEMMDEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKIAIAFSLLNTPPGTPIRLVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGVCSCKDFW 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02809 617 Gene3D Tetratricopeptide repeat domain 283 512 IPR011990 GO:0005515
Adu06g02809 617 Gene3D Tetratricopeptide repeat domain 103 273 IPR011990 GO:0005515
Adu06g02809 617 Pfam PPR repeat family 209 255 IPR002885 -
Adu06g02809 617 Pfam E motif 431 489 IPR046848 -
Adu06g02809 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Adu06g02809 617 PANTHER - 38 603 - -
Adu06g02809 617 Pfam PPR repeat 312 340 IPR002885 -
Adu06g02809 617 Pfam PPR repeat 283 306 IPR002885 -
Adu06g02809 617 Pfam PPR repeat 384 408 IPR002885 -
Adu06g02809 617 TIGRFAM PPR: pentatricopeptide repeat domain 282 307 IPR002885 -
Adu06g02809 617 TIGRFAM PPR: pentatricopeptide repeat domain 211 244 IPR002885 -
Adu06g02809 617 TIGRFAM PPR: pentatricopeptide repeat domain 312 345 IPR002885 -
Adu06g02809 617 Pfam E+ motif 495 521 IPR046849 -
Adu06g02809 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Adu06g02809 617 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 141 IPR002885 -
Adu06g02809 617 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 38 603 - -
Adu06g02809 617 Pfam DYW family of nucleic acid deaminases 525 617 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02809 Adu-Chr6 105310235 105312088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02809 39 617 Glycoside Hydrolase AT3G49170 35.993 9.64e-128 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02809 - - lang:109350726 999.193