Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02770 ATGGCCAACCCTGCCAATCCCTCAACCCCCTCCCAATCCCAATCCCGAACCCCAATCCTCCGAACCCCAACCCCACTCCAATTTCTCGCCGCGCGATTTCTCCGCAATTGCCGATATATTCGCCGACTCTTCCATCTCTCCCGGATCGCTCCTCCATGCGGAACTGGACGCTCCGGGATTGAACCGGGTTCAGAGCTACTGCTCGCCGTGTTTGACCGTTTCGGTTCGTCGCCCAAGCTGCTTCACTCGCTGTTCCTGTGGGCCGAGAAGCAACCCGGGTTCAGACCTAATTCGAAGCTCTTCGACGCTGTGGTCAACGCTCTCGCTAAGTCCAGGGAGTTTGACTCCGCTTGGACGCTGATTCTTCATCAGATCGATGATGGAAACGACGAGGGAGAAGCTTTGGTTTCCGTTGCCACCTTCGCTATCATGATTCGACGCTATGCACGTGCAGGTATGGTGCAACCTGCAATTCGTACATTTGAGTTTGGAAGAAAGCACAATTCAATTATAGATTCTGGATCGGAATCGAGTTTATTTGAGATATTGTTGGATTCACTTTGCAAAGAAGGGTCTGTTAGGGCAGCTTACGAGTATTTATGTCTAAGAAAGAAGATGACCCAGGGTTGGGTTCCTTCCATTCGGGCTTATAACATAATGTTAAATGGATGGTTTCGGTCAAGGAAACTCAAACACGGTGAGAGACTTTGGGAGGAGATGAAGAAGGAGAATGTAAGACCAACTGTTGTGACATATGGTACCCTTATCGAAGGGTATTGTCGGATGCGTCGAGTTGAAAAGGCGCTCGAGATCGTTGGTGACATGATCAAAGAAGGAATTGCACCAAATGCAATAGTGTATAATCCAATAATTGATGCATTGGCAGAAGCTGGGAGATTTAAAGAGGCCTTGGGGATGATGGAACGATTTCATGTTTTAGAAATTGGCCCTACCGAATCGACATATAATTCTCTGGTAAAGGGGTTTTGTAAGGCAGGAGATCTTGTAGGTGCTAGTAAGATTCTTAAAATGATGATAAGTAGGGGTTTCATTCCAAGCTCCACCACCTATAATTACTTCTTTAGGTACTTCTCAAGATGCGGGAAGATTGAGGAAGGGATGAACTTGTATACCAAGATCATCCAATCCGGTTATACGCCTGATCGGCTAACATACCATCTTTTGGTGAAGATGTTATGTGAAGAGGAAAGGTTAGACTTGGCAGTTCGAGTTAGCAAGGAAATGAGACATAAAGGATTGGACATGGACTTGGCTACAAGTACCATGTTAGTTCATTTGCTATGCAAAATGCGTAGGTTGGAAGAGGCTTTTGCTGAATTCGAGGACATGATACGAAGGGGTATAGTTCCTCAGTACCTTACTTTCCAGAGACTGAATGCGGAGTTAAAGAAACAGGGTATGACTGAAGTGGCACAAAAGCTTTGCAATTTGATGTCTTCCATTCCCCATTCTACCAGCTTGCCAAATACCTACAGTGAAGACAACAATGATGCGCGTGCAAGAAGGAATTCTATAATTCAGAAGGCCCAGGCATTTTCTGATATGTTGAAAAACTGTAACGACCCTCGAGAACTCGAAAAGTATAAATGTTCTTCTGAAAATGATGTCTCAAGTGCGAACGGTTTGATAGAGGATATTGAGAGAAAGATAAGTGCCAAACGAACATCTTCTGTGATTTGA 1701 0.4521 MANPANPSTPSQSQSRTPILRTPTPLQFLAARFLRNCRYIRRLFHLSRIAPPCGTGRSGIEPGSELLLAVFDRFGSSPKLLHSLFLWAEKQPGFRPNSKLFDAVVNALAKSREFDSAWTLILHQIDDGNDEGEALVSVATFAIMIRRYARAGMVQPAIRTFEFGRKHNSIIDSGSESSLFEILLDSLCKEGSVRAAYEYLCLRKKMTQGWVPSIRAYNIMLNGWFRSRKLKHGERLWEEMKKENVRPTVVTYGTLIEGYCRMRRVEKALEIVGDMIKEGIAPNAIVYNPIIDALAEAGRFKEALGMMERFHVLEIGPTESTYNSLVKGFCKAGDLVGASKILKMMISRGFIPSSTTYNYFFRYFSRCGKIEEGMNLYTKIIQSGYTPDRLTYHLLVKMLCEEERLDLAVRVSKEMRHKGLDMDLATSTMLVHLLCKMRRLEEAFAEFEDMIRRGIVPQYLTFQRLNAELKKQGMTEVAQKLCNLMSSIPHSTSLPNTYSEDNNDARARRNSIIQKAQAFSDMLKNCNDPRELEKYKCSSENDVSSANGLIEDIERKISAKRTSSVI 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02770 566 Gene3D Tetratricopeptide repeat domain 328 559 IPR011990 GO:0005515
Adu06g02770 566 Gene3D Tetratricopeptide repeat domain 202 327 IPR011990 GO:0005515
Adu06g02770 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Adu06g02770 566 Pfam Pentatricopeptide repeat domain 411 463 IPR002885 -
Adu06g02770 566 Gene3D Tetratricopeptide repeat domain 66 201 IPR011990 GO:0005515
Adu06g02770 566 PANTHER LEAF PROTEIN-LIKE 56 556 - -
Adu06g02770 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 388 422 IPR002885 -
Adu06g02770 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 318 352 IPR002885 -
Adu06g02770 566 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 56 556 - -
Adu06g02770 566 TIGRFAM PPR: pentatricopeptide repeat domain 216 248 IPR002885 -
Adu06g02770 566 TIGRFAM PPR: pentatricopeptide repeat domain 356 388 IPR002885 -
Adu06g02770 566 TIGRFAM PPR: pentatricopeptide repeat domain 250 284 IPR002885 -
Adu06g02770 566 TIGRFAM PPR: pentatricopeptide repeat domain 285 318 IPR002885 -
Adu06g02770 566 TIGRFAM PPR: pentatricopeptide repeat domain 321 353 IPR002885 -
Adu06g02770 566 TIGRFAM PPR: pentatricopeptide repeat domain 391 423 IPR002885 -
Adu06g02770 566 TIGRFAM PPR: pentatricopeptide repeat domain 428 457 IPR002885 -
Adu06g02770 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 423 457 IPR002885 -
Adu06g02770 566 Pfam PPR repeat family 212 261 IPR002885 -
Adu06g02770 566 Pfam PPR repeat family 317 362 IPR002885 -
Adu06g02770 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 213 247 IPR002885 -
Adu06g02770 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 248 282 IPR002885 -
Adu06g02770 566 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 317 IPR002885 -
Adu06g02770 566 Pfam PPR repeat 286 309 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02770 Adu-Chr6 104720668 104722532 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02770 93 507 Miscellaneous Gene Families AT4G11690 26.005 4.55e-46 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02770 - - gmx:100793484 809.29