Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02390 ATGTTCAGTGCATCGGTGAAACGACGCCGTTTTGCAATCAGAAGAGAAGAACGAAGAAACATCCCAGCCCCTTTCTCTCACACTCTGAAACCTAACCCTAAGCCCAGCCAGCCAACATCACCGTCCCTCATCGCCGAACTCTTCTCCTCCGGTACAGGGTGCTGTGGCCGCCAGCTGGGGCAAAGCGTGGGTGCCGTCGTACTCTTCTCATCGCATCGCCGAACTCTTCTTAGTTCTCATCGCTCCTCTTCTCGGCGCCGTCGCACGAAGGACGCGTTGATCCGGTGGCATTGCCGTCGCGAAGGGTTTTGTTCCTCAGTCCCTTTTTGTTACTGTGGCTGTTTTGAGTTCACTTGTAAATCACCCCTATGCACTCAATATATCGTTCTGTTGCCAGCGATTCCGCTAGCCTATGTTGTAAGGTTCTGGTATCTAGAAGTTTCTCTTCACACTAGCAAAGGGAACAGCGACCGAGAAATTCTCCGGTCTCTTTTCAATGATCCAGCTTGTGATGGTATACATCTATCTCAGAACCTTATTCAAAGGTTACTCCATCGATTTAAAGACGATTGGAGGTCTGCATTGGGGATATTCAAATGGGCAGGTTTGCGATCAGGCTTTAGACACTCGCCGGAATCGTATGATATGATGATAGACATATTAGGGAAAATGAAGCAAATGGAAAAGTTGAGAGATTTCTTGGAAGAAATGCATGAGGTGGGTCTTGTTACTCTGAATACTATAGCTAAGGCGATGAGGAGGTTTGTTGGTGCAGGACAGTGGGAAGATGCAGTAAGGATATTTGATAGCTTAGAATCTCTTGGGTTGGAGAAGAACACCGAATCCATGAACTTGTTGCTTGATACGCTATGCAAAGAGGAATTTGTTGAACAAGCTCGTGAAATTTTCTTGGAGCTAAAGCAGCACATTGCTCCAAATGCTTATACGTTTAACATATTTATACATGGCTGGTGCAAAGTCCGTCGTGTGGATGAGGCACAGTGGACAATCCAAGAGATGAAAGGACATGGTTGTCACCCTTGTGTTATAAGTTACTCAACCATCATCCAATGCTATTGCCAAGAACAGAATTTTGACAGGGTCTACGAGCTGCTTGATGAAATGCAAGCACATGGTTGCTCCCCAAATGTGGTTACTTATACTACCATCATGTCTGCATTGGCGAAGGCAGAAAAATTTGAGGAAGCTTTGCAAGTAGTTGAGAGAATGAGGTCTGTTGGATGCAAACCTGATACCTTATTCTACAATTCATTCATTTACACATTAGGGAGAGCAGGCAAAGTAGATGATGCTATGTTTGTATTCAAGGTGACGATGCCTAATGATGGTGTTGTCCCAAATACATCCACCTATAATTCAATGATTTCTATGTTCTGTCATTATGCACAAGAGAATAGAGCTTTTGATACATTGCGGGAGATGCAAGATGCGGGCCTCTGTAAGCCTGATCTTCAAACTTACCACCCAATGATCAAATTATGCTTTAAAACGGGAAAAATAGATAGTTGGTTGAAGGATATATTGAATGACATGGTCAACAAACATCATCTTGGTCTTGATATCTCTACCTATACACTTCTGATTCATGGGCTCTGTAGAGCAGATAGATACAAGTGGGCATACTCTTTATTTGAGGACATGATTGATCAAGATGTAATGCCTAGATTGAAAACTTGTCGTTTGCTATTGGAAGAAGTCAAACAGAAAAATATGTATGAAGCCTCCGAGAAAATTGAGGACCTTATGAAGAAAATGTTTTCAAATATGGTTTCTCCAATGATTGCTGAGGTTTGCGAATATAATGTCGCATTTGAATCAAATGAGTAG 1848 0.4291 MFSASVKRRRFAIRREERRNIPAPFSHTLKPNPKPSQPTSPSLIAELFSSGTGCCGRQLGQSVGAVVLFSSHRRTLLSSHRSSSRRRRTKDALIRWHCRREGFCSSVPFCYCGCFEFTCKSPLCTQYIVLLPAIPLAYVVRFWYLEVSLHTSKGNSDREILRSLFNDPACDGIHLSQNLIQRLLHRFKDDWRSALGIFKWAGLRSGFRHSPESYDMMIDILGKMKQMEKLRDFLEEMHEVGLVTLNTIAKAMRRFVGAGQWEDAVRIFDSLESLGLEKNTESMNLLLDTLCKEEFVEQAREIFLELKQHIAPNAYTFNIFIHGWCKVRRVDEAQWTIQEMKGHGCHPCVISYSTIIQCYCQEQNFDRVYELLDEMQAHGCSPNVVTYTTIMSALAKAEKFEEALQVVERMRSVGCKPDTLFYNSFIYTLGRAGKVDDAMFVFKVTMPNDGVVPNTSTYNSMISMFCHYAQENRAFDTLREMQDAGLCKPDLQTYHPMIKLCFKTGKIDSWLKDILNDMVNKHHLGLDISTYTLLIHGLCRADRYKWAYSLFEDMIDQDVMPRLKTCRLLLEEVKQKNMYEASEKIEDLMKKMFSNMVSPMIAEVCEYNVAFESNE 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02390 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
Adu06g02390 615 Gene3D Tetratricopeptide repeat domain 173 307 IPR011990 GO:0005515
Adu06g02390 615 Gene3D Tetratricopeptide repeat domain 378 444 IPR011990 GO:0005515
Adu06g02390 615 Gene3D Tetratricopeptide repeat domain 308 377 IPR011990 GO:0005515
Adu06g02390 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Adu06g02390 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 453 IPR002885 -
Adu06g02390 615 Coils Coil 390 410 - -
Adu06g02390 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 347 IPR002885 -
Adu06g02390 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Adu06g02390 615 PANTHER OS02G0601600 PROTEIN 150 592 - -
Adu06g02390 615 Pfam PPR repeat 527 554 IPR002885 -
Adu06g02390 615 Pfam PPR repeat 414 442 IPR002885 -
Adu06g02390 615 Gene3D Tetratricopeptide repeat domain 445 614 IPR011990 GO:0005515
Adu06g02390 615 TIGRFAM PPR: pentatricopeptide repeat domain 530 561 IPR002885 -
Adu06g02390 615 TIGRFAM PPR: pentatricopeptide repeat domain 350 384 IPR002885 -
Adu06g02390 615 TIGRFAM PPR: pentatricopeptide repeat domain 385 419 IPR002885 -
Adu06g02390 615 TIGRFAM PPR: pentatricopeptide repeat domain 422 455 IPR002885 -
Adu06g02390 615 TIGRFAM PPR: pentatricopeptide repeat domain 315 347 IPR002885 -
Adu06g02390 615 TIGRFAM PPR: pentatricopeptide repeat domain 213 243 IPR002885 -
Adu06g02390 615 TIGRFAM PPR: pentatricopeptide repeat domain 457 490 IPR002885 -
Adu06g02390 615 Pfam PPR repeat family 278 326 IPR002885 -
Adu06g02390 615 Pfam PPR repeat family 453 501 IPR002885 -
Adu06g02390 615 Pfam PPR repeat family 347 396 IPR002885 -
Adu06g02390 615 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 150 592 - -
Adu06g02390 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Adu06g02390 615 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 527 561 IPR002885 -
Adu06g02390 615 Pfam PPR repeat 213 241 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02390 Adu-Chr6 97467035 97469387 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02390 286 602 Miscellaneous Gene Families AT4G11690 27.414 1.62e-34 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02390 - - adu:107494799 949.503