Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02258 ATGACCAAGTTATGTTCCTTTGTGTATCTCTTTGTCTTGCTTGCCAATTCAGAAGCTCTCAGTTCAACCAGGGAGCCAACAATTCCGGCATCTCCGGGTATCTTACCATATGTGACGGCGCCCGATATTTCCTCATTTTTCCCCGCTCCAAGTGATAATCAACCAATGAGTAGTGGTGATGCTCCGTCGCCGATGCCAAGTTCCGGCGAGTTCCACGGCAGGATGACTTCCAGTTCAGCTAGGTTGAATTATGCCAATGCCATTATTCAGCGCACTACCAGAAACACGGTCATTAGCAACGGTTCTAGGTGGACATTTTTGTGGAAGAGCAGGGACCACGATTTGCAGTTCGAGTATGGTCAGTCCGAGTCACCAAAGAAGCAAGCAAAATCGACGGAACCTGATTCTACCGGCAAATCCGAATTACGAAGAAGACTTAAAGGAACCTTAAGTTGCTCTATTGCACCTCCCTCACCGTCATTCTCTTCGGAGATATTGGAGTTAAACTTGTTCGACCTGGGTCACGACAGCCTCATGTGGACGTCCTTCAACTACAGCGGACGCACCATGTTCCTGGAGGAGAACATGGCATGGATCGACCAAGTCCAGCAGAGGATTCCCGACTTAGAGTCGTACCACGTGGCCTATGACACCAACGTCCACCAGTCGGACGATTTCATCAAGATTGGAATGGAGGAGGAGGAGTGCAAGAAGGTGAGCGACCCCCAGATCGTCGCTATCACTGCTGCTGGAGTCTCTGTGAAAAGCCTCCGCCATGCCACTGCTGTTGGGTGCCCCTTGTCGTCGATCGGATGTCATCGCCTTTTTGCTATCACCGCGGTTGAGGTCTACCGCGCTAAGACACCACTCCAATCTGTTTTCAGAACGATAACCGTTCGTGCTTACTCATCACCACCACCACAACCAACAAAATGGACCAAAAACAAGAACCTTACAACAATGTTCCACAGGTACGTGGACAAGACCAGCGTCACTTCTTGGAACTCCATCATTGCCGACCTCGCCCGAAGCGGCGACTCCCTCGAGGCCCTCCGCGCCTTCTCCTCCATGCGTAAGCTTTCCCTCATTCCCAATCGCAACACCTTTCCTTGCGCCATCAAATCCTGTTCTTCGCTCTTCGACCTTTGCGCCGGCAAACAGACCCATCAACAGGCTTTCGTCTTTGGCTTTGAATCGGATCTCTTTGTTTCCTCAGCTCTTATTGATATGTACTCTAAGTGTGGCCATTTGGAAGACGCCCGAAACCTGTTCGACGAAATTCCCCAAAGGAATGTGGTGTCTTGGACTTCAATTATTGCCGGCCATGTCCAAAATGGTTGCGCTACTGAGGGCATTCGCTTGTTTAAGGAGCTTTTAGTTGAAGAGAGTGAGAATGTGGGGTGTGTTCAGGAGGAGGAGGAGGATGGTTTTGTGGATCCGATAGTTGTAGGTTCGGTGCTTTCGGCTTGTTCTTGGGTGCGGCAGAAGAGAACTACTGAAGGGGTTCATGGTTTTGTGATTAAGAGGGGGTTCGATGGGTGTTTAGGGGTTGGGAACACGTTGATGGATGCTTATGCAAAGTGTGGGGAGATGGGTGTGTCAAGGAAGGTGTTTGATGGGATGATTGAGAAAGATGCTTACTCTTGGAACTCTATGATTGCTGAATATGCACAAAATGGATTGTCAGCTGAGGCATTCAATGTTTTCAGTGATATGGTGAAGAGTAGCAAGGTCAGTTATAATGCTGTGACATTGTCGGCAGTGTTGTTAGCCTGTGCAAATTCAGGAGCTCTGCAGGTTGGGAAGTGCATACATGGTCAGGTTATAAAGATGGATTTGGAGGATAATGTTTTTGTAGGTACCTCTGTAGTAGACATGTACTGTAAATGTGGGAGAGTTGAGTTGGCTAGAAAGGGGTTTGATCGCGTGAAAGAGAAGAATGTTAAGTCATGGACCGCTATGGTTGCTGGCTATGGAATGCATGGTTGCGCAAAAGATGCTTTGGAAGTCTTCTACAAGATGATAAGGTCTGGAGTCAAACCGAACTACATCACTTTTGTGTCAGTTTTGGCTGCTTGCAGCCATGCTGGTCTGTTGGAAGAAGGATGGAATTGGTTTAACAGAATGAATCACGAATTTAATGTTGAGCCTGGAATTGAGCATTATTCGTGCATGGTTGATCTTCTTGGCCGTGCTGGTTATCTTAATGAGGCTTATGGATTGATAAAGAAAATGAAGGTGAGACCTGATTTTATAATATGGGGTTCCCTTCTTGGGGCTTGTAGGATTCACAAAAATTTGGAACTAGGGGAGATTTCTGCTAGAAAACTATTTGAGTTAGACCCAAGTAATTGTGGGTACTACGTACTACTCTCGAATATATATGCTGATGCTGGACGGTGGGATGATGTCGAGAGGATGAGAATATTGATGAAAAATCATGGATTGCTTAAAACACCTGGATTCAGCATAGTTGAACTTAAAGGTAGAATACATGTATTTTTAGTTGGTGATAAAGAGCATCCTCAACACGTTAAGATTTACGAGTATTTGGACAAATTAAATGTTAAGCTGCAAGGACTGGGCTATGTGCCTAACGTAACATCAGTGCTTCATGACATTGATGATGAAGAAAAAGGAATGGTTCTAAGAGTTCACAGTGAGAAACTTGCTGTTGCCTTTGGAATCATGAATTCAGTTCCTTGTGCAACTATCCAGATCATAAAAAATCTTAGGATTTGTGGTGACTGCCATGCTGTAATTAAATTGATTTCCAAGGTGGAAAACCGAAAAATTATTGTCAGAGACTCAAAGCGATTTCATCATTTTAAGGATGGATTCTGTTCTTGTGGGGACTATTGGTGA 2865 0.4569 MTKLCSFVYLFVLLANSEALSSTREPTIPASPGILPYVTAPDISSFFPAPSDNQPMSSGDAPSPMPSSGEFHGRMTSSSARLNYANAIIQRTTRNTVISNGSRWTFLWKSRDHDLQFEYGQSESPKKQAKSTEPDSTGKSELRRRLKGTLSCSIAPPSPSFSSEILELNLFDLGHDSLMWTSFNYSGRTMFLEENMAWIDQVQQRIPDLESYHVAYDTNVHQSDDFIKIGMEEEECKKVSDPQIVAITAAGVSVKSLRHATAVGCPLSSIGCHRLFAITAVEVYRAKTPLQSVFRTITVRAYSSPPPQPTKWTKNKNLTTMFHRYVDKTSVTSWNSIIADLARSGDSLEALRAFSSMRKLSLIPNRNTFPCAIKSCSSLFDLCAGKQTHQQAFVFGFESDLFVSSALIDMYSKCGHLEDARNLFDEIPQRNVVSWTSIIAGHVQNGCATEGIRLFKELLVEESENVGCVQEEEEDGFVDPIVVGSVLSACSWVRQKRTTEGVHGFVIKRGFDGCLGVGNTLMDAYAKCGEMGVSRKVFDGMIEKDAYSWNSMIAEYAQNGLSAEAFNVFSDMVKSSKVSYNAVTLSAVLLACANSGALQVGKCIHGQVIKMDLEDNVFVGTSVVDMYCKCGRVELARKGFDRVKEKNVKSWTAMVAGYGMHGCAKDALEVFYKMIRSGVKPNYITFVSVLAACSHAGLLEEGWNWFNRMNHEFNVEPGIEHYSCMVDLLGRAGYLNEAYGLIKKMKVRPDFIIWGSLLGACRIHKNLELGEISARKLFELDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGFSIVELKGRIHVFLVGDKEHPQHVKIYEYLDKLNVKLQGLGYVPNVTSVLHDIDDEEKGMVLRVHSEKLAVAFGIMNSVPCATIQIIKNLRICGDCHAVIKLISKVENRKIIVRDSKRFHHFKDGFCSCGDYW 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02258 954 TIGRFAM PPR: pentatricopeptide repeat domain 519 545 IPR002885 -
Adu06g02258 954 TIGRFAM PPR: pentatricopeptide repeat domain 547 579 IPR002885 -
Adu06g02258 954 TIGRFAM PPR: pentatricopeptide repeat domain 650 682 IPR002885 -
Adu06g02258 954 TIGRFAM PPR: pentatricopeptide repeat domain 684 717 IPR002885 -
Adu06g02258 954 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 330 364 IPR002885 -
Adu06g02258 954 MobiDBLite consensus disorder prediction 48 76 - -
Adu06g02258 954 Gene3D Tetratricopeptide repeat domain 713 828 IPR011990 GO:0005515
Adu06g02258 954 Gene3D Tetratricopeptide repeat domain 599 712 IPR011990 GO:0005515
Adu06g02258 954 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 400 434 IPR002885 -
Adu06g02258 954 Pfam Polysaccharide biosynthesis 168 240 IPR021148 -
Adu06g02258 954 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 545 579 IPR002885 -
Adu06g02258 954 MobiDBLite consensus disorder prediction 128 142 - -
Adu06g02258 954 Pfam DYW family of nucleic acid deaminases 862 954 IPR032867 GO:0008270
Adu06g02258 954 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 291 461 - -
Adu06g02258 954 Pfam PPR repeat family 646 693 IPR002885 -
Adu06g02258 954 Pfam PPR repeat family 544 593 IPR002885 -
Adu06g02258 954 Pfam E motif 764 826 IPR046848 -
Adu06g02258 954 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 316 948 - -
Adu06g02258 954 Gene3D Tetratricopeptide repeat domain 331 470 IPR011990 GO:0005515
Adu06g02258 954 Gene3D Tetratricopeptide repeat domain 471 598 IPR011990 GO:0005515
Adu06g02258 954 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 647 681 IPR002885 -
Adu06g02258 954 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 291 461 - -
Adu06g02258 954 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 316 948 - -
Adu06g02258 954 Pfam PPR repeat 433 459 IPR002885 -
Adu06g02258 954 Pfam PPR repeat 405 432 IPR002885 -
Adu06g02258 954 Pfam PPR repeat 333 360 IPR002885 -
Adu06g02258 954 Pfam PPR repeat 721 747 IPR002885 -
Adu06g02258 954 MobiDBLite consensus disorder prediction 118 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02258 Adu-Chr6 93875970 93889204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02258 312 954 Glycoside Hydrolase AT3G49170 38.110 1.40e-153 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02258 - - lang:109338154 1098.19