Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02212 ATGTGTGAAGCAGAAACTAAAATGGCCATGCCTCTTTCTAACACACCATCAAAACCCACAACCCAACCTCAATTTGTTCCATACACTCCTGAAAACCCATCTCGACCCACCCAAGAACAGGGCTCAAGAACACGAGATTACTCAACGTGCTTCAATTGTGGCAAGAAAGGTCACTGGTACAGACAATGTCCTCTTGCTCTTCACAGTAACGGTTCCTCTCCGATCCCCGATAACATATATTGCCGCTGTGGGTACGGATTCTGCTTGGTGAAGACTTCAAAGTCTACTAAGAACTTCGGAAAGAAGTTCTATGTTTGCCCAATCAAAGAGGGGAAACAGTGTAAAGGGTTTATTGGATTCTGTAATGAACCACCTAGGGATGAAGAATACTTTCATCCTCCGCCGTATAAGTACCCTGTTTGTGAGTGCGGTGCAGGGGTTTGTGCAAAAGAGAGGGACCCCAATGCTGATAGAAAGTTCCGTTTTATTTGTCCTGTTCAACCGGGACATGGAAACTGTGGATTCATTGTGACAGAGGATGAACTGCGTGGTAAGCAGCGAATTACGGGCTTGAGTGGGAGTGGTGAATTACTTGTCGATCATCCGGAAAGCATGACAGCGATGGACATTTCGGAGGCTCCCTCCTTGAACGCCATACCTGAGGTTCCACTGGGTGATGACACATCTCCAAAGGCAACCCCTCCAAGACAAGTTGGTTTAAACGAATTTGAGGTTATTGATGATGATCTTGATGCGGAAGATGTGAACTGGGATGACTTTGACAAGGAAGCGGAGTCATTCCGGTCAAGATTTGCAACAGGGCTAACTTGCCGACAAAATCTATTCGGCAACAACAGTTTCAATGATGCTATTGGTGATAATGCACCTCCAACAGGCACTTTCACATCCTATGATGAGATCTCTGATTCTGAACACCCAACTGCCGGCGATAGTCCTCCTGAATGCAATCAGTCTACCGTCACTAGCCTTAATGAAGACGCACAACTTTCTTCAAGAGGTAGCGATACTACGGTTTTGGGTCAGATTTCCGGAGATGATGTTATGCAAACTGAGGTTCCTGGAGGTGTTAGTGCTATGCTAACAGTGACACAAGGCACCAAACGGAAGCTAATGTCGGAGGCCGAAAGAAGAAAGAAAATGGTGTCATATATGCTTCGTGAGTTTCTCACAGAACTCGAGGACCTGGATATTCATGATCATGACTCTATTAGAGTAGCGGTGGATGGCTGTTTTAAGATATTGCAGGAGCTTGTTCTTACTGCTGACTATAAGCTCTTTTCTGACCATGTTTGGGACTATATCAATAATGTTTCAGCCATAGCAGAAATCGACAAGTCCATGGAGAATCGCCTCACTCTGGGCGAATCCAATCGAATTATCGAAGAGGAGAAAATGAAGCTGGCACAGATCCAGGAAGAAACTGTCGAGACCGAGGCCATGTTCATAGCATGTAACTTGAAAGGGAAAACGCTTCGTGAAGAAGTCTTGCGTATGAAGGCCGAGCTCCACGAGAAGCAGAACCAACTGAAATCTTGTGAACTGGAGAGCGCGACGATCGAGTCTCGTCTTGGTGACTTAAAGAGAAGAAGGCTGGAAGCTGACACAAAATTGATGGGCAGAGTTGAGGAAGCTGAATCCGCAAGGAGACTCAATGAGGAGAGACAACTGAAGCAAATGGCAGCTATGGCAGCTCTGGAGAAGCTAAAGCATCAATTACAAAACTGA 1746 0.4582 MCEAETKMAMPLSNTPSKPTTQPQFVPYTPENPSRPTQEQGSRTRDYSTCFNCGKKGHWYRQCPLALHSNGSSPIPDNIYCRCGYGFCLVKTSKSTKNFGKKFYVCPIKEGKQCKGFIGFCNEPPRDEEYFHPPPYKYPVCECGAGVCAKERDPNADRKFRFICPVQPGHGNCGFIVTEDELRGKQRITGLSGSGELLVDHPESMTAMDISEAPSLNAIPEVPLGDDTSPKATPPRQVGLNEFEVIDDDLDAEDVNWDDFDKEAESFRSRFATGLTCRQNLFGNNSFNDAIGDNAPPTGTFTSYDEISDSEHPTAGDSPPECNQSTVTSLNEDAQLSSRGSDTTVLGQISGDDVMQTEVPGGVSAMLTVTQGTKRKLMSEAERRKKMVSYMLREFLTELEDLDIHDHDSIRVAVDGCFKILQELVLTADYKLFSDHVWDYINNVSAIAEIDKSMENRLTLGESNRIIEEEKMKLAQIQEETVETEAMFIACNLKGKTLREEVLRMKAELHEKQNQLKSCELESATIESRLGDLKRRRLEADTKLMGRVEEAESARRLNEERQLKQMAAMAALEKLKHQLQN 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02212 581 ProSiteProfiles Zinc finger CCHC-type profile. 50 64 IPR001878 GO:0003676|GO:0008270
Adu06g02212 581 Pfam GRF zinc finger 80 117 IPR010666 GO:0008270
Adu06g02212 581 PANTHER OS07G0190500 PROTEIN 139 558 - -
Adu06g02212 581 PANTHER OS07G0190500 PROTEIN 20 148 - -
Adu06g02212 581 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 20 148 - -
Adu06g02212 581 PANTHER ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN 139 558 - -
Adu06g02212 581 SUPERFAMILY Retrovirus zinc finger-like domains 29 67 IPR036875 GO:0003676|GO:0008270
Adu06g02212 581 MobiDBLite consensus disorder prediction 317 347 - -
Adu06g02212 581 MobiDBLite consensus disorder prediction 288 347 - -
Adu06g02212 581 Coils Coil 495 529 - -
Adu06g02212 581 Gene3D - 30 74 - -
Adu06g02212 581 Pfam Zinc knuckle 49 64 IPR001878 GO:0003676|GO:0008270
Adu06g02212 581 MobiDBLite consensus disorder prediction 1 46 - -
Adu06g02212 581 Coils Coil 460 487 - -
Adu06g02212 581 SMART c2hcfinal6 49 65 IPR001878 GO:0003676|GO:0008270
Adu06g02212 581 MobiDBLite consensus disorder prediction 288 309 - -
Adu06g02212 581 MobiDBLite consensus disorder prediction 10 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02212 Adu-Chr6 92769175 92772561 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02212 - - aip:107647323 1117.06