Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02205 ATGGCTTCACTCCTTCCAGCTCCACACTTTTCCACACCCCTTATCTCCAAGCTCACTTCTTCCCCCAAAACTTGGAAACTCTTCATCCTCCCTCACCCTTTATACCCTATAGCCCTTCACATCAAGAAGAAAAACGTACTTCTTTTTCCCACCAATGCATTCTATACGCAAGGGGTCTATGCCCCTTCTTCCCCTTCCAAATTGGGGAACAGAACAGAGAAAAAGAATGAGCTTGAGAATGACCCAATTGCCTTGCTCAACGAGAGAATTCGTCGCGACTATGGCAGCAGGGAGGTTTCAAGAACTGTTATGGACTCAGAGGAGGCTGATAGGTACATACAGATGGTGAAGCAGCAGCAGCAGAAGGGGTTGCAGAAACTGAAGGGTGAGAGGAAGGAAGGGAAAGATGGTACCTTCAGCTACAAGGTTGACCCTTATACGCTTCAATCCGGTGACTATGTTGTTCACAAGAAGGTTGGCATTGGGAGGTTTGTTGGGATCAGGTTGGATGTTCCAAAGAATTCTACAGAACCTACTGAATATGTTTTCATCGAGTATGCTGATGGGATGGCGAAGCTTCCTCTTAAGCAGGCATCGAAAATGCTCTATAGATATAGTCTTCCAAACGAGAACAAAAGACCTCGGACATTGAGCAAGTTAAATGATATTAGTAGTTGGGAGAAAAGAAAGATTAAGGGGAAGGTTGCGATACAGAAAATGGTCGTTGACTTGATGGAGCTCTATCTACATAGGCTCAAACAGAGAAGACCGCCTTACTCGAAAAGTCCTGCCATGACTGAATTTGCTGCTCAATTTCCTTATAAGCCTACACCTGATCAACAACAGGCTTTTATTGATGTTGAGAGGGATTTGACAGAGCGAGAAACTCCAATGGACAGATTAATTTGTGGAGATGTTGGTTTTGGCAAAACTGAGGTTGCACTACGTGCTATCCACTGTGTTGTGTCAGCAAAAAAGCAAGCAATGATTCTAGCACCAACTAGAGTTCTAGCAAAACAACATTTTGATGTTATATCTGAACGCTTTTCTGTATATCCTGATCTCAAAGTTGGACTACTAAGCAGGTTTCAGACCAGAGCAGAGAAAGAAGCACAATTGGACAAGATTAAGAATGGTGACCTGGACATTGTTGTTGGAACTCACTCGCTTCTTGGAGATCGTGTTGTATATAACAAACTTGGCCTGCTCGTGATCGATGAGGAACAGAGGTTTGGTGTCAAACAGAAGGAGAGGATTGCTTCTTTTAAAACTTCGGTGGACGTACTTACGCTATCGGCAACCCCTATCCCGAGAACTCTCTATTTAGCCTTGACAGGGTTTCGTGATGCTAGTTTAATTACGACCCCACCTCCAGAAAGAGTTCCCATCAAGACTCACCTTTCTGCATTCAGTAAGGATAGAGTAATATCGGCCATCAAGTATGAGCTCGGCCGTGGCGGTCAAGTTTTTTATGTTCTGCCACGTATTAAAGGACTTGAAGAAGTAATGTATTTTCTTCAAGAGTCATTCCCAGATGTTGAAATAGCCATTGCCCATGGGAAGCAATACTCAAGGCAGTTAGAGGATACCATGGATAGATTTGCTTCAGGCGAAACAAAAATCCTTATCTGCACAAATATAGTAGAAAGTGGGCTTGATATTCAAAATGCAAATACCATTATCATTCAAGATGTTCAACAATTTGGACTCGCACAGTTGTACCAGTTACGTGGAAGGGTTGGGCGAGCCGATAAGGAAGCACATGCACACTTATTTTACCCTGATAAAAGTATGCTCTCTGACCAAGCACTGGAGAGGCTTGCAGCTCTTGAAGAATGCCATGAGCTTGGTCAAGGATTCCAACTAGCCGAGCGAGACATGGCTATAAGAGGTTTTGGTACAATATTTGGTGAACAACAAACAGGAGATGTCGGAAATGTCGGCATTGATCTATTCTTTGAGATGCTCTTTGAGAGCTTGTCCAAGGTTAACTTTGATTCTATTCTCCAATTTCCTTCTGCACTTTATACTTATGTATTTCAGGTAGACTTGAACATCAATCCGCATCTCCCATCTGAATACATAAATTATTTGGACAACCCCATGCAAATAATAAATGAAGCTGAGAGAGTTGCGGAGAACGACATATGGAGTCTTGTGCAATTTACGGAGAGTCTGCGCCGCCAATTTGGCAAAGAGCCTCAGTCCATGGAGATTTTGTTGAAGAAGCTTTATGTGAGGAGAATGGCTGCTGATATGGGAATATCTGGAATCTACTCTTCAGGGAAGACTATCATAATGAAAACAAATATAAATAAAAAGGTATTCAAAATTATGATAGAGTCAATGGCATCAGAAACACTAAAAAATTCATTGGTTCTTGAAGGTGACCAAATCAAGGCCGAGCTTCTCTTAGAGCTACCAAAAGAACAACTCCTCAATTGGCTTTTTCAATGCTTGGCTGAACTTCATGCTTCACTACCTGCCCTCATAAAATACTAG 2502 0.4241 MASLLPAPHFSTPLISKLTSSPKTWKLFILPHPLYPIALHIKKKNVLLFPTNAFYTQGVYAPSSPSKLGNRTEKKNELENDPIALLNERIRRDYGSREVSRTVMDSEEADRYIQMVKQQQQKGLQKLKGERKEGKDGTFSYKVDPYTLQSGDYVVHKKVGIGRFVGIRLDVPKNSTEPTEYVFIEYADGMAKLPLKQASKMLYRYSLPNENKRPRTLSKLNDISSWEKRKIKGKVAIQKMVVDLMELYLHRLKQRRPPYSKSPAMTEFAAQFPYKPTPDQQQAFIDVERDLTERETPMDRLICGDVGFGKTEVALRAIHCVVSAKKQAMILAPTRVLAKQHFDVISERFSVYPDLKVGLLSRFQTRAEKEAQLDKIKNGDLDIVVGTHSLLGDRVVYNKLGLLVIDEEQRFGVKQKERIASFKTSVDVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSAFSKDRVISAIKYELGRGGQVFYVLPRIKGLEEVMYFLQESFPDVEIAIAHGKQYSRQLEDTMDRFASGETKILICTNIVESGLDIQNANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAHLFYPDKSMLSDQALERLAALEECHELGQGFQLAERDMAIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVNFDSILQFPSALYTYVFQVDLNINPHLPSEYINYLDNPMQIINEAERVAENDIWSLVQFTESLRRQFGKEPQSMEILLKKLYVRRMAADMGISGIYSSGKTIIMKTNINKKVFKIMIESMASETLKNSLVLEGDQIKAELLLELPKEQLLNWLFQCLAELHASLPALIKY 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02205 833 CDD DEXHc_TRCF 262 455 - -
Adu06g02205 833 Pfam TRCF domain 684 773 IPR005118 GO:0006281
Adu06g02205 833 SUPERFAMILY CarD-like 142 211 IPR036101 -
Adu06g02205 833 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 16 804 - -
Adu06g02205 833 SMART ultradead3 272 464 IPR014001 -
Adu06g02205 833 Pfam DEAD/DEAH box helicase 298 436 IPR011545 GO:0003676|GO:0005524
Adu06g02205 833 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 325 598 IPR027417 -
Adu06g02205 833 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 471 628 IPR001650 -
Adu06g02205 833 SMART CarD_TRCF_2 147 249 IPR003711 -
Adu06g02205 833 Gene3D - 147 662 IPR027417 -
Adu06g02205 833 SMART helicmild6 500 584 IPR001650 -
Adu06g02205 833 Gene3D - 212 455 IPR027417 -
Adu06g02205 833 Gene3D - 151 211 - -
Adu06g02205 833 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 291 453 IPR014001 -
Adu06g02205 833 PANTHER TRANSCRIPTION-REPAIR-COUPLING FACTOR 16 804 - -
Adu06g02205 833 SMART TRCF_a_2_a 683 781 IPR005118 GO:0006281
Adu06g02205 833 Gene3D - 680 826 IPR037235 -
Adu06g02205 833 SUPERFAMILY TRCF domain-like 680 823 IPR037235 -
Adu06g02205 833 Pfam CarD-like/TRCF domain 148 248 IPR003711 -
Adu06g02205 833 Pfam Helicase conserved C-terminal domain 478 583 IPR001650 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02205 - - adu:107494618 1613.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g02205 06 92428708 92435208 Adu06g02205 06 92428708 92435208 ECH