Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g02180 ATGAAAATCGAAAAAAAAAACGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAGGAAGAGGAAGAGAAAAAGGAAGAAGAAGAAGAAGAAGACGAAGGTgaagaagaagaagaagagaagaagaagaagaagaagacgaagagaaaccgtttgagtggggcgcgtgtagttacgctccattcaaaCTTCCCAATTTGGCATTGGCAACAACAACAGAAAGCAAAATTTGGAACTGGGCATGACATGAAGGTAGCATGTTTCTGCACCCCAGATATTAATTATGTTTATTTTGGTACCCAAAGACCAAAATTTGGTTCAAAAGAAGCACTTTTCTATCTCCAAAGGTGCTCAAATTTCAAGCATCTCAGGCAAGTTCATGGAAGAATAATCCGTTATGGCCTCACACATGATCAATTACTCATTAGGAACCTCATTCAAATTTCTTCCTCTTATGGCAAATTGAACTATGCCAAATTGGTTTTTGAGCAACTCAATTCCCCAGATACCTTCACTTGGAATGTGATGATTAGAGCATACACTAGGTTTGGTTCCCCTGAAAAAGCTCTTATTTTGTTCACTATTATGGTGTCAAAGGGCATTGAACTTGACAAGTTCACATACCCTTTTGTGATTAATGCTTGCATTGCTTCTTCAGCAACTGATTTTGGAAAAGTTGTGCAAGCTTTAGCAATCAAAATGGGGTTTTGGAATGACACCTATGTGCAGAACACTATGATGAATCTTTACTTCAAATGTGAGGATGCTGATAATGGACACAAGGTGTTCGATAAAATGCGCGTGCAGGAGGTTGTTTCTTGGACCACGGCGATTGGAGGTCTAGTTGCTTGCGGACGACTCGAGGCTGCTCGGAGATTGTTTGAGGAAATGCCTTCTAAGAATGTTGTTTCGTGGACGGCGATGATTGATGGGTATGTGAGACACCAGCAGCCAATGGAGGCCTTTGACTTGTTTGAAAGAATGCGACTTGATGGTGTGCAGCCCAACGAGTTCACCCTTGTGAGCTTGATCAAGGCTTGTGCTGAAATGGGTAGCCTCAAATTGGGTAAATGGATTCATGATTATGCTTTCAACAATGACTTCAAACTTGATCCTTTCTTGGGTACTGCTCTTATAGACATGTACAGCAAATGTGGCAGTTTAGATGATGCAAGGCAAGTTTTCGATACCATGGAGGCCAAGAACTTAGCCACGTGGAACACAATGATCACTAGCTTGGGTGTGCATGGATTGAGGAATGAAGCATTGGAACTTTTTGAGGAAATGTTGAATAATAAGTCAAATGAAGTTCCTGATGCTATCACATTTGTTGGTGTTCTGAATGCATGCCTTCAATTGAATGATCTTGAACAAGGTCAGAAGTATTTCAATCTCATGACACAACATTATGGTATAACACCTTTGTTGGAGCATTATGCATGCATGGTTCAACTCTATAGAAATGCTAATGTGCTGGATGATATTTACACATTGGATAAGACAATATCAGTGGAGAAAACAAACAACTATGTTGCAGAGTTTCTCCAAGAGAACAAGATCATTGGTGTTGATGACATAGAGGAACTCCTGCAGAAGCATTACAGagagaAGACGCGTCGTTTTGTCCAGAGCCGCCACGGGAAGGGTCGTCGCCATCAAGCCCAGCTACCATCGCCGCCGTTCGTACCTCTGTCTTGCGCCGCCAGATCTGTCGCCATCACTAGGAAAGAAACAGAACGCACGGATAGAGAAGGGATTGCAGGTAGGTTTCGCTGCTGTTGGAACTCTGCTGCTGCTGCTGCCGCTGCCATGGCCGTTGCgcctctgctgccaagaaatgccactgctgccactgagatccacttcgtggtcgccggagttctggttgccgctgttgcttgggatggctgccagtgttgctgcaaaaccgatttagcgaccgccactgttttgttcttattaaaggtcgtgttctga 1983 0.3722 MKIEKKNEEEEEEEEEEEEEEEEEEKKEEEEEEDEGEEEEEEKKKKKKTKRNRLSGARVVTLHSNFPIWHWQQQQKAKFGTGHDMKVACFCTPDINYVYFGTQRPKFGSKEALFYLQRCSNFKHLRQVHGRIIRYGLTHDQLLIRNLIQISSSYGKLNYAKLVFEQLNSPDTFTWNVMIRAYTRFGSPEKALILFTIMVSKGIELDKFTYPFVINACIASSATDFGKVVQALAIKMGFWNDTYVQNTMMNLYFKCEDADNGHKVFDKMRVQEVVSWTTAIGGLVACGRLEAARRLFEEMPSKNVVSWTAMIDGYVRHQQPMEAFDLFERMRLDGVQPNEFTLVSLIKACAEMGSLKLGKWIHDYAFNNDFKLDPFLGTALIDMYSKCGSLDDARQVFDTMEAKNLATWNTMITSLGVHGLRNEALELFEEMLNNKSNEVPDAITFVGVLNACLQLNDLEQGQKYFNLMTQHYGITPLLEHYACMVQLYRNANVLDDIYTLDKTISVEKTNNYVAEFLQENKIIGVDDIEELLQKHYREKTRRFVQSRHGKGRRHQAQLPSPPFVPLSCAARSVAITRKETERTDREGIAGRFRCCWNSAAAAAAAMAVAPLLPRNATAATEIHFVVAGVLVAAVAWDGCQCCCKTDLATATVLFLLKVVF 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g02180 660 MobiDBLite consensus disorder prediction 8 39 - -
Adu06g02180 660 PANTHER BNAA06G32750D PROTEIN 102 518 - -
Adu06g02180 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 302 IPR002885 -
Adu06g02180 660 TIGRFAM PPR: pentatricopeptide repeat domain 407 435 IPR002885 -
Adu06g02180 660 TIGRFAM PPR: pentatricopeptide repeat domain 305 339 IPR002885 -
Adu06g02180 660 TIGRFAM PPR: pentatricopeptide repeat domain 173 206 IPR002885 -
Adu06g02180 660 TIGRFAM PPR: pentatricopeptide repeat domain 274 305 IPR002885 -
Adu06g02180 660 TIGRFAM PPR: pentatricopeptide repeat domain 378 404 IPR002885 -
Adu06g02180 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Adu06g02180 660 Pfam PPR repeat family 170 217 IPR002885 -
Adu06g02180 660 Pfam PPR repeat family 302 350 IPR002885 -
Adu06g02180 660 Pfam PPR repeat family 403 452 IPR002885 -
Adu06g02180 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
Adu06g02180 660 Coils Coil 1 49 - -
Adu06g02180 660 MobiDBLite consensus disorder prediction 1 50 - -
Adu06g02180 660 Pfam PPR repeat 246 269 IPR002885 -
Adu06g02180 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 438 IPR002885 -
Adu06g02180 660 SUPERFAMILY TPR-like 282 433 IPR011990 GO:0005515
Adu06g02180 660 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 403 IPR002885 -
Adu06g02180 660 Gene3D Tetratricopeptide repeat domain 230 359 IPR011990 GO:0005515
Adu06g02180 660 Gene3D Tetratricopeptide repeat domain 103 229 IPR011990 GO:0005515
Adu06g02180 660 Gene3D Tetratricopeptide repeat domain 360 460 IPR011990 GO:0005515
Adu06g02180 660 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 102 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g02180 Adu-Chr6 91570510 91578175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g02180 95 504 Glycoside Hydrolase AT3G49170 28.087 8.91e-50 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g02180 - - gmx:100789790 638.647