LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu06g01962	ATGGAATCGAGCATTCTAGAATCCATCGGCGTGGAGATAATCGGAGTCATGTCACCAGTCTCCATCTGCATGTTTCTCGTCGTCCTCCTCGTCTACTCCCTCTCCTCGTCCTCCTCCCCTTCCTCAGCCGTCTCCGACATCCGCACCGCCGCTAACCTCGTCTACGCCGAGAACCCCTCCGACACCGCCGCACAGAAGCTCGAGGGAGCACTCCTCAACGCCCTCGTATTCGTCATCCTTATCGCCATCGTCACCTTCCTCCTCCTCCTCCTGTACTACTACAACTGCACCTCCTTCCTCAAACACTACACGCGCTTCAGCGCCTTCTTCGTCCTCGGCTCCATGGGCGGATCAATCTTCCTCTCACTCATCCAGCGATTCTCGATCCCCGTCGATTCCGTCACGTGCTTTATCCTTCTCTTCAATTTTACCGTCGTCGGGGTTCTCTCCGTTTTCGGCACCGGGATTCCGATAATCGTTCGGCAGTCGTACATGGTCTGTTTGGGGATCAGTGTTGCTGCGTGGCTGACCAAGCTGCCCGAGTGGACCACCTGGGTTCTTCTGGTGGCTCTGGCGGTTTATGATCTTGTGGCGGTTTTGGCACCTGGTGGACCGTTGAAGATGTTGGTTGAGTTGGCATCCAGCCGGAATGAGGAGCTTCCTGCTTTGATTTATGAGGCCCGGCCCACCACAGTGGCGCGGGCCGGGTCTCGCGGAGGGACTAGTTTGGGGCTTTTGGTGACTGGGGTTACAGCAGGCGAGCCGTCTTCAGCGCCGTCATCGTCGTCGTCATCGGCAATTGAGCTTCAAGCTGTGTCTAGGGACAACAAAGATAGGAATGTGAATGATAATTTGAATGAGAATAGGGATTATGGTGGGAATGAGTACTCTGTTGTGGCAATGGGTGGTTTTGGGGGTGAGAGGAGTCAGGGTGGGAGGAATGACGAAGAGGAGAGATCGCCATTGGTTGGCAATGGTGGCGGAGAGGGTGGGATTGTTGATGAGGAAAGGCATGAAGGGAATGAGAGCAGAGGTGGTGATGTGGAGATTGCTGAGAGGGGCATTAAGCTTGGCCTTGGAGACTTTGTTTTCTACAGTGTTCTTGTTGGTAGAGCTGCAATGTATGATCTCATGACTGTGTATGCTTGTTACCTTGCAATTATATCAGGACTAGGCTGCACTCTTATTCTGCTGTCGGTGTGCCGCCAAGCTCTGCCGGCGCTCCCAATTTCGATCACCTTGGGTCTCCATGCTGCTTGGCCTGTGCTTGATGATGCTGAGCAGGAGCAGATCAGAGACCAAGAAGTGAAGAAGTGGCTTGTTGATCTCCAAGATGCTGTCTATTGTCTGATGATTTGCTGGATGAGCTCTCCACTAATGCCACCACTGCCACTGCCTCTCAAAGGGATCCAGGTAATGTTTCTTCCTAGTCTCACTATTGTTAAAGAGAAAGATGATCTTGTTCTAAAAGAAGAGCTTGCCAAAGGTCTGGAGGACATGACATGGAGAATTCAGTCATCTCTGGTTAAAAGTTCTGCTATATATGGCAGGGACAATGACAAGGAGGCCATCAAAGAAATGTTGTTATATGGTACTTGTGATGCTAACATATCTATGATCCCCATTGTAGGCATTGGAGGAGGTGGAAAAACTACCTTGGCTCAATTGGTTTACAATGATGCCAAAGTGGAGGACAAATTTGACATTAAAGCATGGCTTTCTAGTACTGATAACAGCTTCTGA	1743	0.51	MESSILESIGVEIIGVMSPVSICMFLVVLLVYSLSSSSSPSSAVSDIRTAANLVYAENPSDTAAQKLEGALLNALVFVILIAIVTFLLLLLYYYNCTSFLKHYTRFSAFFVLGSMGGSIFLSLIQRFSIPVDSVTCFILLFNFTVVGVLSVFGTGIPIIVRQSYMVCLGISVAAWLTKLPEWTTWVLLVALAVYDLVAVLAPGGPLKMLVELASSRNEELPALIYEARPTTVARAGSRGGTSLGLLVTGVTAGEPSSAPSSSSSSAIELQAVSRDNKDRNVNDNLNENRDYGGNEYSVVAMGGFGGERSQGGRNDEEERSPLVGNGGGEGGIVDEERHEGNESRGGDVEIAERGIKLGLGDFVFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRQALPALPISITLGLHAAWPVLDDAEQEQIRDQEVKKWLVDLQDAVYCLMICWMSSPLMPPLPLPLKGIQVMFLPSLTIVKEKDDLVLKEELAKGLEDMTWRIQSSLVKSSAIYGRDNDKEAIKEMLLYGTCDANISMIPIVGIGGGGKTTLAQLVYNDAKVEDKFDIKAWLSSTDNSF	580

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu06g01962	580	SMART	psh_8	68	422	IPR006639	GO:0004190\|GO:0016021
	Adu06g01962	580	Gene3D	Presenilin	333	422	IPR042524	-
	Adu06g01962	580	PANTHER	PRESENILIN	1	416	-	-
	Adu06g01962	580	Pfam	NB-ARC domain	518	576	IPR002182	GO:0043531
	Adu06g01962	580	MobiDBLite	consensus disorder prediction	253	271	-	-
	Adu06g01962	580	MobiDBLite	consensus disorder prediction	331	345	-	-
	Adu06g01962	580	Pfam	Presenilin	10	416	IPR001108	GO:0004190\|GO:0016021\|GO:0016485
	Adu06g01962	580	PRINTS	Presenilin family signature	195	212	IPR001108	GO:0004190\|GO:0016021\|GO:0016485
	Adu06g01962	580	PRINTS	Presenilin family signature	178	185	IPR001108	GO:0004190\|GO:0016021\|GO:0016485
	Adu06g01962	580	PRINTS	Presenilin family signature	17	27	IPR001108	GO:0004190\|GO:0016021\|GO:0016485
	Adu06g01962	580	MobiDBLite	consensus disorder prediction	304	345	-	-
	Adu06g01962	580	MobiDBLite	consensus disorder prediction	252	288	-	-
	Adu06g01962	580	Gene3D	-	499	580	IPR027417	-
	Adu06g01962	580	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	503	577	IPR027417	-
	Adu06g01962	580	PANTHER	PRESENILIN	1	416	IPR001108	GO:0004190\|GO:0016021\|GO:0016485

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu06g01962	Adu-Chr6	82972233	82976425	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu06g01962	1	416	Miscellaneous Gene Families	AT1G08700	60.444	1.89e-165	477

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu06g01962	K04505		-	gmx:100819461	447.588

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Adu06g01962	06	82972233	82976425	Adu06g01962	06	82972233	82976425	ECH