Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01509 ATGGTGAAGACGATGGTTTTGTCCCGCTCACgtatagTTGAAGACTTGAACTATCCTTTGGTTCGCTTTTGCTCCTCTATCACATTCCATTATTCTCAATATCTCTGCACAATCTCTCAGGCTACTCAACACTCAACAACACTCTGTATATATAGTGACAATTTCAGAAGCATGGAATCCGCCAAAACAATGTTTATTACATCTCCACCCTTTCCTCCAAGAACTCTCCTTTCTTCTACCTCTTCGGCTTCAGTTCTGATGCTTCATGAACAAGCTGCACCTTTAGTTGCTTCTTGGTCTTCAAGTTTTGCTGCTCAGCATTTTCCTACCTCTGTTCTCTCGCAAGAGCAGCGTGATGAGTATAAGCCTCTGCTTCACTTGTATAAGGAAGATAAGAACTCTCAGGTTACATCAAATACAAGAAATGTGGATACGGGCTTGGTCCGCGATAAGGATAGCAATGATAATGCTGATCAGTTATTGCATCACTTTAGGCAGCAGTTGCAACTCTGGTCACATTTGCAAAATGTATTGAAATCCTCAACAGGAGAAACTGCTGCTGCTTCATCTCTGCAGCCCGATAGAGTTGATTCAGATAGACCTGCAGATGGTTTGCAATTTGATGCAGTATCCCTCTCTAAGCAAGCTCTGTCGGCCGCAAAACAAGCAGCATTAGTGGCTGAAGAGATGAAAATGATTGAAGATGACGAAGATGATGATCCACTTCCTCTTGGTCTGGCTTCCACAAGCTTAGCTGACACTTCAATTGGAAAGAATAAAATTGTGCGGTCAAGAAGGCTTCTAGAAAGGAGACTGAAGCAAAGAAAAGTTTCAAAGTCAAAATTTCTTGATGAAGAAAGTTATCTTGCAAGAAAATCAGACCTACAGGGAAGGCTACAAGTAGAAAAGAAGATAAAGGAAGGATTTGATCAAAATGATCCCCTGCGCTTGTTCTTGTGGGGTCCTGAGACAAAGAAACTTTTGACCTCTGAAGAAGAGTCTCAATTGTTCGTTCAGCTACAGGATTTTCTGAGATTAGAAGAAGTAAAGATCAGGCTCCAATCTCAATTTGGACGGGAACCAACTTTGATTGAATGGGCTGAAGGTGTGGGTCTTAGCTGCCATGCCCTGCAGACACAGATCCATCATGGTAACATAATCAGAGAAAAGATAATTAATGCCAATTTACGGATGGTTGTTCATATTGCTAAACAGTATCAGGGTCGTGGTCTCAGTCTTCAGGACTTATTGCAGGAGGGAAGTATGGGACTTATGAAGAGTGTTGAAAGGTTTAAACCACGAGTTGGTTGCCGGTTTGGTACCTATGCATACTGGTGGATAAGGCAAACAATTAGAAAGGCCATATTTCTACATTCCAGGTCAATCCGTCTGCCGGAGAGTTTATATACCCTTTTGGGCAAGGTCATGGAAGCAAAGAAATTATTCATTCAAGAAGGAAATATTCACCCCAGTAAAGAAGAATTAGCAGAAAGGGTAGGAATTACGGTAGAAAAGTTTGAAAAGTTGTTATTTTCTGCAAGAATACCAATATCAATGCAGCAACCTGTGTGGGCAGACCAAGATACAACTTACCAGGAAATTACTGCAGATAGTGCAATTGAGATCCCAGGCTTGAGTGTCGAAAAAGAGCTTATGAGGAGGCACGTGCGCAACCTCCTAAGCAACTTAAGCCCAAAGGAGAAGAGGATAGTCAGTCTAAGATTTGGTATCGAGGATGGCCGCGAGAAATCTCTGCAAGAAATTGGAAACGTACTTGGTTTGACAAAGGAGAGGGTCCGACAGTTGGAGAGCCGAGCACTGAAGAAGCTCAAGCAGTGCCTTGAGTGCGAAGGACTTCATGCATATGTGGACTTGATTGTATAG 1884 0.423 MVKTMVLSRSRIVEDLNYPLVRFCSSITFHYSQYLCTISQATQHSTTLCIYSDNFRSMESAKTMFITSPPFPPRTLLSSTSSASVLMLHEQAAPLVASWSSSFAAQHFPTSVLSQEQRDEYKPLLHLYKEDKNSQVTSNTRNVDTGLVRDKDSNDNADQLLHHFRQQLQLWSHLQNVLKSSTGETAAASSLQPDRVDSDRPADGLQFDAVSLSKQALSAAKQAALVAEEMKMIEDDEDDDPLPLGLASTSLADTSIGKNKIVRSRRLLERRLKQRKVSKSKFLDEESYLARKSDLQGRLQVEKKIKEGFDQNDPLRLFLWGPETKKLLTSEEESQLFVQLQDFLRLEEVKIRLQSQFGREPTLIEWAEGVGLSCHALQTQIHHGNIIREKIINANLRMVVHIAKQYQGRGLSLQDLLQEGSMGLMKSVERFKPRVGCRFGTYAYWWIRQTIRKAIFLHSRSIRLPESLYTLLGKVMEAKKLFIQEGNIHPSKEELAERVGITVEKFEKLLFSARIPISMQQPVWADQDTTYQEITADSAIEIPGLSVEKELMRRHVRNLLSNLSPKEKRIVSLRFGIEDGREKSLQEIGNVLGLTKERVRQLESRALKKLKQCLECEGLHAYVDLIV 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01509 627 PIRSF Sigma_factor_SigC 47 627 IPR016262 -
Adu06g01509 627 ProSitePatterns Sigma-70 factors family signature 1. 415 428 IPR000943 GO:0003700|GO:0006352|GO:0006355
Adu06g01509 627 Gene3D - 546 626 IPR036388 -
Adu06g01509 627 PANTHER RNA POLYMERASE SIGMA-70 LIKE DOMAIN, RNA POLYMERASE SIGMA-B/F/G TYPE-RELATED 61 627 - -
Adu06g01509 627 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 464 537 IPR013324 -
Adu06g01509 627 Gene3D - 464 541 IPR036388 -
Adu06g01509 627 CDD Sigma70_r4 553 611 - -
Adu06g01509 627 Gene3D - 133 460 - -
Adu06g01509 627 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 61 627 - -
Adu06g01509 627 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 522 622 IPR013324 -
Adu06g01509 627 Pfam Sigma-70 region 3 472 541 IPR007624 GO:0003700|GO:0006352|GO:0006355
Adu06g01509 627 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 388 614 IPR014284 GO:0003700|GO:0006352|GO:0006355
Adu06g01509 627 PRINTS Major sigma-70 factor signature 563 575 IPR000943 GO:0003700|GO:0006352|GO:0006355
Adu06g01509 627 PRINTS Major sigma-70 factor signature 599 610 IPR000943 GO:0003700|GO:0006352|GO:0006355
Adu06g01509 627 PRINTS Major sigma-70 factor signature 415 428 IPR000943 GO:0003700|GO:0006352|GO:0006355
Adu06g01509 627 PRINTS Major sigma-70 factor signature 439 447 IPR000943 GO:0003700|GO:0006352|GO:0006355
Adu06g01509 627 PRINTS Major sigma-70 factor signature 584 599 IPR000943 GO:0003700|GO:0006352|GO:0006355
Adu06g01509 627 Pfam Sigma-70, region 4 559 612 IPR007630 GO:0003700|GO:0006352|GO:0006355
Adu06g01509 627 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 311 460 IPR013325 GO:0003700|GO:0006352|GO:0006355
Adu06g01509 627 Pfam Sigma-70 region 2 392 455 IPR007627 GO:0003700|GO:0006352|GO:0006355
Adu06g01509 627 ProSitePatterns Sigma-70 factors family signature 2. 584 610 IPR000943 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01509 Adu-Chr6 32188418 32192972 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01509 - - aip:107648612 1058.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g01509 06 32188418 32192972 Adu06g01509 06 32188418 32192972 ECH