Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01383 ATGCGAGTGCAACAGAGAGGAATGATGCCTACAATTGTCGGTAGGCTAACGGGTGGGACCACCTGCAAGGACACTTCGATGCCAAAACAAGAGGGGGAGCCGATCCACTTTGAGAGGGTTAGGTTTTTTCTTCTTCCTCGGAGTTTTGTTTTTCACAGCTGTAACGAATCAACAATGCCTCGCTATGAAGATAAATACGGCAACACACGCCTCTATGTTGGTCGATTGGCTTCAAGGACGCGTTCCCGTGATCTGGAGCGAGTTTTCAGCCGATATGGAAGAGTTCGAGATGTGGATATGAAGCATGATTACGCCTTTGTTGAATTCAGCGATCCTAGAGATGCTGATGATGCAAGATACAACTTGGATGGCCGTGATGTTGATGGAAGTCGTATTATTGTGGAATTTGCGAAAGGGGTTCCTCGTGGTTCCCGTGAATATTTGGGTCGTGGTCCTCCTCCTGGAACTGGGCGTTGCTTTAACTGTGGTATTGATGGCCATTGGGCCCGAGATTGCAAAGCTGGAGACTGGAAGAACAAGTGTTATCGTTGTGGTGAGAGGGGTCATATAGAAAAAAACTGCAAGAACAGTCCCAAAAAGCTGAGTAGACGTGGGCGTAGTTATTCCCGCTCTCCGGTCAGGTCACGTTCCCCAGTCAGGTCACGCTCTCCTCGTCGTGGCAGAAGCAGGGACAGGAGTTACACCCCAGAACGCAGTTACAGTCGATCAAGATCCCCAGTTAGGGGGGATCGAAGCCCAGTTCGTGATAGATCAGAGAGCCCACGCTCTAGAAGCCCTGAACCCAAAGGTAGCCCTCAGCCCTCGAAGGCAAGGAAGCATAGTCCATCACCTGATGAAGGGAGTCCACAGAAGAGAGGTGATGCATCTCCTGGCAATGAGAGGATGGTTACACAGCAAGATGGATCTGATTACAGTGATGGCCCCAGAGGAAAGAGCAGAAGCCCCGCTAGTCCAGCAGGGGATGACAGCCCAAAGGCTAATGGTCGCAGCCGCAGTCCTAGTCCCAGAGATGATGACAGAAGCCCCATTGATGACGAAGAAGACAACCAGCGTAATCTACCAAGAGGCAGTGAGTCCCCTTAA 1104 0.5091 MRVQQRGMMPTIVGRLTGGTTCKDTSMPKQEGEPIHFERVRFFLLPRSFVFHSCNESTMPRYEDKYGNTRLYVGRLASRTRSRDLERVFSRYGRVRDVDMKHDYAFVEFSDPRDADDARYNLDGRDVDGSRIIVEFAKGVPRGSREYLGRGPPPGTGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLSRRGRSYSRSPVRSRSPVRSRSPRRGRSRDRSYTPERSYSRSRSPVRGDRSPVRDRSESPRSRSPEPKGSPQPSKARKHSPSPDEGSPQKRGDASPGNERMVTQQDGSDYSDGPRGKSRSPASPAGDDSPKANGRSRSPSPRDDDRSPIDDEEDNQRNLPRGSESP 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01383 367 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 132 IPR000504 GO:0003723
Adu06g01383 367 SMART c2hcfinal6 158 174 IPR001878 GO:0003676|GO:0008270
Adu06g01383 367 SMART c2hcfinal6 180 196 IPR001878 GO:0003676|GO:0008270
Adu06g01383 367 MobiDBLite consensus disorder prediction 192 367 - -
Adu06g01383 367 ProSiteProfiles Zinc finger CCHC-type profile. 180 196 IPR001878 GO:0003676|GO:0008270
Adu06g01383 367 Gene3D - 58 147 IPR012677 -
Adu06g01383 367 ProSiteProfiles Zinc finger CCHC-type profile. 158 173 IPR001878 GO:0003676|GO:0008270
Adu06g01383 367 SMART rrm1_1 70 135 IPR000504 GO:0003723
Adu06g01383 367 SUPERFAMILY RNA-binding domain, RBD 63 158 IPR035979 GO:0003676
Adu06g01383 367 PANTHER SPLICING FACTOR, PUTATIVE-RELATED 64 350 - -
Adu06g01383 367 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 64 350 - -
Adu06g01383 367 MobiDBLite consensus disorder prediction 228 264 - -
Adu06g01383 367 Pfam Zinc knuckle 179 196 IPR001878 GO:0003676|GO:0008270
Adu06g01383 367 Pfam Zinc knuckle 158 173 IPR001878 GO:0003676|GO:0008270
Adu06g01383 367 Gene3D - 149 177 - -
Adu06g01383 367 Gene3D - 178 228 - -
Adu06g01383 367 MobiDBLite consensus disorder prediction 338 360 - -
Adu06g01383 367 SUPERFAMILY Retrovirus zinc finger-like domains 149 197 IPR036875 GO:0003676|GO:0008270
Adu06g01383 367 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 139 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01383 Adu-Chr6 20701291 20705988 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01383 K12896 - gmx:100813237 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g01383 06 20701291 20705988 Adu06g01383 06 20701291 20705988 ECH