Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g01024 ATGGAGTCTTGCTCCAGCATGCGCCAGCTGAGGCAGATCCAGGCCCGCATGACCCGCACGGGCCTCATGGACCACACATTCCCAGCCAGCAGAGCCCTAGCTTTCTGTGCCCTCTCCGACTCCGGAGACGTTCGTTATGCCCACGCTGTCTTCGACCGTATTGAACAACCCAACACGTTCATGTGGAACACCATGATCAGGGGCTACAGCAGGGCCAATGTTCCTGCTATGGCGTTTTCCTTCTTTCTCCGAATGCTTCGCCAACTCTCCGAGATGGACTGCAGAACCTTCGTTTTTTCGCTCAAGGCGTGCGAGCAGTTCTCGGGTTCTGTTGAGGGGGAATCGGTGCACTGTTTGATTCGGAAGACGGGCTTTGATTCTGAGTTGCTAGTGCGAAATGGGTTGGTTCACTTTTATGCTGAACGTAGTTGGCTGAAAAGTGCGCGCCAGGTGTTTGATGAAAGTTCTGAGAGGGATGTTGTTACTTGGACCACAATGATTGATGGCTATGTGGGAAATAAGTCTTCAGATTCGGCTTTGGAATTGTTTGGTTTGATGTTGAGTAGTGGTGTTGAGCCCAATGAGGTGACCTTGATTGCGGTGCTCTCGGCGTGTTCCCAGAATGGTGATATTGTCATGGGAAGGAGTATCCATGAAGACATAGCAAGGAAGAATGTAAGGTATACTTTGAGTTTAAACAATGCATTATTGGACATGTATGTGAAATGCGGTAGTTTGATGGCTGCTAGAGAGCTTTTTGATAAAATGCAGACTAAGGATGTTTTCTCGTGGACTAGTTTGGTTAATGGGTATGCTAAATGTGGTGACTTGGAATCTGCAAGGAGGTTTTTTGATCAAACTCCGCATAAAAACGTGGTCTCATGGAATGCAATGATTGCAGGATATTCTCAGAACAACAAACCCAAAGAATCAATAAAGTTGTTTTGGGAAATGATCGCAGCAGGTATGGTTCCCAGCGAGCATACCTTAGTCAGTGTGCTCTCTGCTTGTGGCCAGCTGAGTTGCTTGAATTTGGGACACTGGATTCATCACCATTTTGTCAATGAGAAAAGGGTGCACCTTAGTGTGACTATGGGAAATGCAATTATAGACATGTACGCCAAGTGTGGAAGCATTGATGCAGCAGCAGAAGTCTTTAAAGTAATGCCAGTAAGAAGCCTGATTTCTTGGAATTCCATGATTGCATCCTATGCTGCTCATGGCCGAGCAAAGCAAGCTATCGTTGTATTTGATCAGATGGTATCTATGGGATTTAGGCCAGATGATGTTACATTTGTGAGCTTGTTAACAGCTTGCAGCCATGGTGGGTTAGTTTCCGAAGGACAAGAATATTTTGACACCATGGAAACGAAGTATGGGGTAAAGGCCAAAAGGGAACACTATTCGTGCATGATTGATCTACTTGGTCGAACAGGGCTTCTTGAAGAAGCTTACAAGTTAATAACGAGTATGCCAATGCAACCTTGTGAAGCTGCTTGGGGTGCGCTTTTAAATGCGTGTAGAATGCATGGCAATGTCGAGCTTGCTAAATTGTCGGCTGGTAACCTTATGAAGTTGAATCCAGAAGACAGTGGAACATATGTTCTGCTGGCAAATATCTGTGCCAATGATCGAAACTGGGGCGATGTGAGGAGGGTGCGAAGTTTGATGAGAGACAAGGGTGTGAAGAAGATTGCTGGTCATAGCTTGATAGAGATAGAGGGTGAATTTAAGGAATTTTTGGTTGCTGATGAATCAAACACTCAATCTGAGGAGACCTATAAAGTACTGGATCTAATATATTTGTTGTCAAAATTGGAAGACTATGACTCTGAGTTATTTATTATAGGCTTCAATGGCTAA 1863 0.4498 MESCSSMRQLRQIQARMTRTGLMDHTFPASRALAFCALSDSGDVRYAHAVFDRIEQPNTFMWNTMIRGYSRANVPAMAFSFFLRMLRQLSEMDCRTFVFSLKACEQFSGSVEGESVHCLIRKTGFDSELLVRNGLVHFYAERSWLKSARQVFDESSERDVVTWTTMIDGYVGNKSSDSALELFGLMLSSGVEPNEVTLIAVLSACSQNGDIVMGRSIHEDIARKNVRYTLSLNNALLDMYVKCGSLMAARELFDKMQTKDVFSWTSLVNGYAKCGDLESARRFFDQTPHKNVVSWNAMIAGYSQNNKPKESIKLFWEMIAAGMVPSEHTLVSVLSACGQLSCLNLGHWIHHHFVNEKRVHLSVTMGNAIIDMYAKCGSIDAAAEVFKVMPVRSLISWNSMIASYAAHGRAKQAIVVFDQMVSMGFRPDDVTFVSLLTACSHGGLVSEGQEYFDTMETKYGVKAKREHYSCMIDLLGRTGLLEEAYKLITSMPMQPCEAAWGALLNACRMHGNVELAKLSAGNLMKLNPEDSGTYVLLANICANDRNWGDVRRVRSLMRDKGVKKIAGHSLIEIEGEFKEFLVADESNTQSEETYKVLDLIYLLSKLEDYDSELFIIGFNG 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g01024 620 Pfam PPR repeat family 394 440 IPR002885 -
Adu06g01024 620 Pfam PPR repeat family 158 205 IPR002885 -
Adu06g01024 620 Pfam PPR repeat family 290 337 IPR002885 -
Adu06g01024 620 Pfam E motif 510 572 IPR046848 -
Adu06g01024 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 58 88 IPR002885 -
Adu06g01024 620 Gene3D Tetratricopeptide repeat domain 1 106 IPR011990 GO:0005515
Adu06g01024 620 Gene3D Tetratricopeptide repeat domain 368 596 IPR011990 GO:0005515
Adu06g01024 620 TIGRFAM PPR: pentatricopeptide repeat domain 293 327 IPR002885 -
Adu06g01024 620 TIGRFAM PPR: pentatricopeptide repeat domain 61 87 IPR002885 -
Adu06g01024 620 TIGRFAM PPR: pentatricopeptide repeat domain 395 428 IPR002885 -
Adu06g01024 620 TIGRFAM PPR: pentatricopeptide repeat domain 262 286 IPR002885 -
Adu06g01024 620 TIGRFAM PPR: pentatricopeptide repeat domain 234 261 IPR002885 -
Adu06g01024 620 TIGRFAM PPR: pentatricopeptide repeat domain 161 195 IPR002885 -
Adu06g01024 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 290 IPR002885 -
Adu06g01024 620 Gene3D Tetratricopeptide repeat domain 218 360 IPR011990 GO:0005515
Adu06g01024 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Adu06g01024 620 PANTHER - 265 573 - -
Adu06g01024 620 PANTHER - 5 172 - -
Adu06g01024 620 PANTHER - 112 272 - -
Adu06g01024 620 SUPERFAMILY TPR-like 128 285 IPR011990 GO:0005515
Adu06g01024 620 Gene3D Tetratricopeptide repeat domain 114 217 IPR011990 GO:0005515
Adu06g01024 620 Pfam PPR repeat 60 87 IPR002885 -
Adu06g01024 620 Pfam PPR repeat 467 492 IPR002885 -
Adu06g01024 620 Pfam PPR repeat 262 286 IPR002885 -
Adu06g01024 620 Pfam PPR repeat 367 391 IPR002885 -
Adu06g01024 620 Pfam PPR repeat 234 260 IPR002885 -
Adu06g01024 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 159 193 IPR002885 -
Adu06g01024 620 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g01024 Adu-Chr6 12748111 12749973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g01024 47 598 Glycoside Hydrolase AT3G49170 32.916 9.93e-95 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g01024 - - ccaj:109796361 952.97