Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00643 ATGGCAATCAGTGTCGGCAAGGGGCAGCAGAGGTTTCTTGCAACTGCTTCTCAACAACACCGGAGGAACACACACATGAAAGGTCTAGTGGCTGTGCTTTTGCTTGTAGCATTGAGCACTGCACTGGAAAGCAATGGAGAAGAATATAGTCTTGGGCCATGTGAGCAGAAAGCAAGGAACAATGCTAGGCCTCACAGTGTTTCCATCTTGGAATTTGGGGCAGTTGGAGATGGGAAAACTTTGAATACAGTTGCATTTCAAAATGCTATATTCTATCTCAAGTCATTCACTGATAAGGGTGGTGCTCAACTATATGTTCCTTCTGGCAAATGGCTAACTGCAAGTTTAAACCTTATTAGCCACCTCACTCTCTTCCTTGAAAGAGGAGCTACCATCATTGCATCTCAGGAATATGATCATTGGGATGTTGTGGATTCTCTCCCATCTTATGGTCGGGGAATTAATGTTCCAAGTGGGAGATATCGCAGCTTGATTTATGGACAGAATTTGACTGATGTGGTGATTACAGGTGATAATGGAATTATTGATGGTCAGGGTTCTATCTGGTGGGAACTTTTCAAATCACATTCCTTAAATCACAGTCGACCGCATCTTGTAGAGTTTGTTGATTCTGTTGATGTCACAATTTCCAACTTGACATTTCTAAACTCTCCTGCATGGGACATTCATCCAGTATATTGCAGCAATGTCCAAATTCTGAACATAACAGCTACTGCACCTGCTGAATCTCCATACACAAGTGGTATAGTCCCAGATTCTTCTCAGAATGTTTGTATTGAAAGCAGCAACATTAGCACTGGTCATGATGCAATTGTGCTAAAGAGTGGATGGGATCGGTATGGTGTTGCCTTTGGAAAACCATCCTCAAATGTCCACATCAGGGGTGCTTACCTACAATCATCATCCGGCGCCGGCCTAGCATTCGGGAGTGAGATGTCCGGAGGTATATCTGATGTAACTGCAGAGCAGCTTCATATACTCAACTCCCGCATTGGCATTGAACTGAAGACAACTAAGGGAAGAGGTGGCTATATGAAAGGCATCCTAATTTCTGATGCAGATTTGGTAAATATTGATTTGGGTATCAGCATGAGTGGAAACACTGGTCTCCATCCAGATGAAGAGTATGATCCAAGTGCACTTCCTGTTGTTGATGGCATTACTTTTAAGAACATGATTGGTTCAAATATCACTGTTGCTGGAAACTTTTCAGGTTTAATTGATTCACCATTCACAACAATTTGTCTTTCAAACTTGAATTTCTCTGTCAGTTCTTCATGGTCTTGTTCTAATGTGATCGGTTTCTCCAGTGAGGTGTTTCCTGAGCCATGTCCTGAGCTTCATAACTCAGATTCAAAGTCTTCCTCTTGCTTTTCTTCTCTATACTCACCCTCTAGTTATATCTCGAGCTTATTCAATCAACATCCACAAGAATCATAG 1461 0.4209 MAISVGKGQQRFLATASQQHRRNTHMKGLVAVLLLVALSTALESNGEEYSLGPCEQKARNNARPHSVSILEFGAVGDGKTLNTVAFQNAIFYLKSFTDKGGAQLYVPSGKWLTASLNLISHLTLFLERGATIIASQEYDHWDVVDSLPSYGRGINVPSGRYRSLIYGQNLTDVVITGDNGIIDGQGSIWWELFKSHSLNHSRPHLVEFVDSVDVTISNLTFLNSPAWDIHPVYCSNVQILNITATAPAESPYTSGIVPDSSQNVCIESSNISTGHDAIVLKSGWDRYGVAFGKPSSNVHIRGAYLQSSSGAGLAFGSEMSGGISDVTAEQLHILNSRIGIELKTTKGRGGYMKGILISDADLVNIDLGISMSGNTGLHPDEEYDPSALPVVDGITFKNMIGSNITVAGNFSGLIDSPFTTICLSNLNFSVSSSWSCSNVIGFSSEVFPEPCPELHNSDSKSSSCFSSLYSPSSYISSLFNQHPQES 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00643 486 SMART pbh1 261 282 IPR006626 -
Adu06g00643 486 SMART pbh1 323 344 IPR006626 -
Adu06g00643 486 SMART pbh1 295 317 IPR006626 -
Adu06g00643 486 SMART pbh1 234 260 IPR006626 -
Adu06g00643 486 SMART pbh1 386 408 IPR006626 -
Adu06g00643 486 SMART pbh1 352 373 IPR006626 -
Adu06g00643 486 SMART pbh1 211 231 IPR006626 -
Adu06g00643 486 Pfam Glycosyl hydrolases family 28 162 439 IPR000743 GO:0004650|GO:0005975
Adu06g00643 486 PANTHER POLYGALACTURONASE-RELATED 30 470 - -
Adu06g00643 486 SUPERFAMILY Pectin lyase-like 61 455 IPR011050 -
Adu06g00643 486 Gene3D - 52 446 IPR012334 -
Adu06g00643 486 PANTHER PECTIN LYASE-RELATED 30 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00643 Adu-Chr6 7739076 7742384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00643 26 466 Glycoside Hydrolase AT3G16850 58.916 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00643 - - aip:107645668 860.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g00643 06 7739076 7742384 Adu06g00643 06 7739076 7742384 ECH