LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu06g00616	ATGCGTCGCAACACCAACGGTCGATCGCCGCTGGTGAATCAACAGCGCCAAATCACTGCTTTCTTCTCCAAATCCACTTCTTCTTCTCCTTCTCCTTCTCCCATTCTCTCCGATTCCAAATCCATCAGCAACAATAAAACCTCTAAGCTAAACCCTAACCCTAGCCCTACCCCTCCCACGCCTTCCCCTTCTAATCCCAAACCCATTCTTCTCGTCGGAGCTTCTTCTCCTCTATACTCCGATGACGTCATTGGAAAAAGGATCAAGGTTTATTGGCCTCTTGATAAAGCATGGTACGAAGGTACCGTCAAATCGTTCGATAATGCCACTTCTAAGCATTTAGTGTTATACGACGATGACGAAGAGGAATCGCTCGACCTTTCCAAGGAGAAGTTCGAATGGGTTCAGGATTCTTCATCGTCTGTCAAGAAGCTTAAACGGTTGCGTCGCAGCTGCGACATCCCCATTGTTAGGAAGATGGTGATTGACGACGACGAGAGTGATGGAAGTCCCAAAGGTGTTGATGATGGTAATTGTGGCAGTGATGATTCGGATGAAGATTGGGGGAAGAATGCGGTGGATGAAGGCGCCGAGGAGGAAGATGACGTGGAGCTAGACAACGAGGAAGATGACTATGAAGATGCTGCTGCAGAGAGGTCTAAAAGAAAGTCAAGTGCGAAGGTGGAGCCCAAGAAGCGGAAAATGAGTGGAACAGAGAAACCGGAGCCTGCAAAAAAGAGCAAGAACGTCGAGGAAGCTGGTGGTGTTAAGGGAGCTTTCAAGTTCTCAGTATTGGAGCCTTCAAGTACTTCGGATACTAAAAAGATATCCAATGGCGTTGACAATGTGGCAATTGATGATGCCTCTGAAAGATTTGCGACAAGGGATGCTCAGAAATTTCGCTTTCTCAGAGAAGACCGCAGGGATGCTAAACGAAGGCGTCCTACTGATGAAAATTATGATCCAAGAACTCTCTATTTGCCTCCTGATTTCTTAAGGAGTTTGTCAGATGGCCAGAAACAATGGTGGGAGTTCAAGTCAAAGCATATGGACAAAGTTTTATTTTTCAAGATGGGTAAATTTTATGAACTTTTTGAGATGGATGCACATGTAGGAGTGAAAGAGCTTGACTTGCAGTATATGAAGGGGGAACAACCTCATTGTGGTTTTCCGGAGAGGAATTTCTCAATGAATCAGGGTTACCGAGTTCTTGTTATAGAGCAGACTGAAACACCTGTACAGTTAGAGCTTCGTCGCAAGAATGGCTCAAAAGATAAGGTTGTGAGACGGGAAATATGTGCAGTGGTTACAAAAGGCACACTAACTGATGGGGAGTTGCTGTCAGCAAACCCAGAAGCTGCGTATTTGATGGCACTGACAGAGCAACATGAAAACAACGCAAATGAAGTTTCAGAGCGCATTTATGGACTTTGTATAGTCGATGTTGCCACAAGCAGAATCATTCTTGGACAGTTTAAGGATGACTTGGAATGCAGTGCTTTATGCTGCATCTTGTCTGAGATTAGGCCAGTTGAAATTGTGAAACCTGCTGAAGTGCTCAGTGCTGAAACAGAGAGAGTACTGCTGAAGCATACTAGAAATCCTCTAGTGAATGAATTAGTTCCTAATGTGGAGTTTTGGGATGCTGAAAAAACCGTGGATCAATTGAAGAGAATTTACAGGCACACTGATGAAGTTAGTCTAGAAGATAATGAGCTAGGTTGCTTGCCAGATGTTTTGCTGGAGCTGGTGAAAACTGTCAATGACAATAAAAGTGCACTTTCAGCTCTTGGGGGTGCTCTATATTATCTGAAACAGGCTTTCTTAGATGAGGCATTGCTTAGATTTGCACACTTTGAGTTACTTCCATGTTCTGGCTTCTGTGATCTTGCCTCAAAACCATACATGGTTCTTGATGCAGCAGCCTTGGAGAATCTTGAAATTTTTGAGAATAGCAGAAATGGAGATTCTTCAGGTACTCTGTATTCCCAATTAAACCATTGTGTTACCGCATTTGGAAAGAGACTACTAAGGGCATGGCTTGCAAGACCATTATGTCATATAGAGTTAATTAAGGAGCGCCAGGAAGCCATTACTAGTTTAAAGGGAGTTAATTTACCTTATGCACTAGAATTTCGAAAAGCTTTGTCAAGGTTACCTGACATGGAGCGATTGCTGGCCCGCATCTTCTCCACTAGTGAAGCTAATGGAAGGAATGCTAATAAAGTGGTTCTGTATGAGGATGCAGCAAAGAAACAACTACAAGAGTTTATTTCTGCTCTTCGTGGTTGTGAACTAATGTTGCAAGCATGCTCTTCTCTTGGCGTTATTCTGAATGATGTCAAATCTAGACTACTCCATCATCTGTTAACACCTGGAAAAGTTCTTCCTGATGTCTGCTTGGCTCTGAACCATTTCAAGGATGCCTTTGATTGGGTGGAAGCCAATAATTCAGGCCGTGTAATACCTCATGAAGGAGTTGACCCTGAGTATGACTCAGCCTGTAAGGCAGTTAAAGAAATTGAGTCGAGTTTATCAAAACATCTTATTGAACAAAGGAAATTGCTTGGAGACACATCTATCACTTATGTCACTGTTGGAAAGGACACATACCTTTTAGAAGTCCCAGAAAATTTTCGTGGGAAAGTTCCTCGGGACTATGAGCTGCGTTCATCTAAAAAAGGCTTCTTTAGGTACTGGACTCCTGCTATTAAAAAGTTCCTGGGAGAACTCTCCCAAGCTGAATCTGAAAAGGAGTCCTTATTGAAAAGTACATTGCAGAGATTAATTGGACGCTTTTGTGAAAATCATACTAAGTGGAGGCAATTGGTGTCTACTACAGCTGAGCTGGATGTTTTGATCAGTTTAGCTATTGCTCGTGATTACTATGAAGGGCCAACATGCAGACCAAGTTTTTTAAGCATGCTATCTACCAAAGACAGTCCTTACCTCTCTGCTAAAAGTTTGGGACACCCAGTCCTTAGGAGTGATTCCTTAGGAAAGGGGGCCTTTGTACCCAATGACATATCAATTGGTGGTCAACACGATGCCAACTTTATTCTTCTAACTGGTCCTAACATGGGTGGAAAGTCAACTCTCCTTCGCCAAGTTTGCTTGGCGGTGGTTTTGGCCCAGGTAGGGGCTGATGTCCCAGCAGAGAGTTTTGATTTGTCACCTGTGGACCGTATCTTTGTTCGCATGGGTGCCAAAGATAATATCATGGCTGGCCAGAGTACATTTTTAACTGAGCTTTCAGAAACTGCAACAATGCTGTCTTCAGCCACTCGTAATTCATTGGTGGCTCTTGATGAGCTTGGGCGTGGGACCTCAACTTCTGATGGGCAAGCCATTGCGGAATCTGTTCTAGAACATTTTGTGCGGAAGGTTCAGTGTCGTGGATTGTTTTCTACACATTATCATCGATTAGCTATCGATTATTACAAAGATCCCAAGGTCTCCCTCTGCCATATGGCATGCCAAGTTGGTAGTGGAACAATTGGCGTGGATGAAGTCACCTTTCTTTATAGGCTGACCCCTGGTGCATGTCCCAAGAGCTATGGTGTTAATGTTGCACGGTTGGCAGGGCTTCCAACTTCCGTGCTTCAGAAGGCTGCTGCTAAGTCCAAAGAATTTGAGGCCTCTTATGGTAAATCTAGAAATGCGTCTCTTGAAACAAACTCTCCAAATCAGGAATGGGTTGATGAGATGATAGTTGTAATGAAAATGTTGAACAAGGCTGCTGCAAATTTGAGTTATCAGGAAGGTGGTTGTGACAGCTCCCTCCATGAACTTAAGAGTAGAGCAAGAGAACTTATGCAGCGATGTTAA	3828	0.4365	MRRNTNGRSPLVNQQRQITAFFSKSTSSSPSPSPILSDSKSISNNKTSKLNPNPSPTPPTPSPSNPKPILLVGASSPLYSDDVIGKRIKVYWPLDKAWYEGTVKSFDNATSKHLVLYDDDEEESLDLSKEKFEWVQDSSSSVKKLKRLRRSCDIPIVRKMVIDDDESDGSPKGVDDGNCGSDDSDEDWGKNAVDEGAEEEDDVELDNEEDDYEDAAAERSKRKSSAKVEPKKRKMSGTEKPEPAKKSKNVEEAGGVKGAFKFSVLEPSSTSDTKKISNGVDNVAIDDASERFATRDAQKFRFLREDRRDAKRRRPTDENYDPRTLYLPPDFLRSLSDGQKQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGVKELDLQYMKGEQPHCGFPERNFSMNQGYRVLVIEQTETPVQLELRRKNGSKDKVVRREICAVVTKGTLTDGELLSANPEAAYLMALTEQHENNANEVSERIYGLCIVDVATSRIILGQFKDDLECSALCCILSEIRPVEIVKPAEVLSAETERVLLKHTRNPLVNELVPNVEFWDAEKTVDQLKRIYRHTDEVSLEDNELGCLPDVLLELVKTVNDNKSALSALGGALYYLKQAFLDEALLRFAHFELLPCSGFCDLASKPYMVLDAAALENLEIFENSRNGDSSGTLYSQLNHCVTAFGKRLLRAWLARPLCHIELIKERQEAITSLKGVNLPYALEFRKALSRLPDMERLLARIFSTSEANGRNANKVVLYEDAAKKQLQEFISALRGCELMLQACSSLGVILNDVKSRLLHHLLTPGKVLPDVCLALNHFKDAFDWVEANNSGRVIPHEGVDPEYDSACKAVKEIESSLSKHLIEQRKLLGDTSITYVTVGKDTYLLEVPENFRGKVPRDYELRSSKKGFFRYWTPAIKKFLGELSQAESEKESLLKSTLQRLIGRFCENHTKWRQLVSTTAELDVLISLAIARDYYEGPTCRPSFLSMLSTKDSPYLSAKSLGHPVLRSDSLGKGAFVPNDISIGGQHDANFILLTGPNMGGKSTLLRQVCLAVVLAQVGADVPAESFDLSPVDRIFVRMGAKDNIMAGQSTFLTELSETATMLSSATRNSLVALDELGRGTSTSDGQAIAESVLEHFVRKVQCRGLFSTHYHRLAIDYYKDPKVSLCHMACQVGSGTIGVDEVTFLYRLTPGACPKSYGVNVARLAGLPTSVLQKAAAKSKEFEASYGKSRNASLETNSPNQEWVDEMIVVMKMLNKAAANLSYQEGGCDSSLHELKSRARELMQRC	1275

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Adu06g00616	1275	MobiDBLite	consensus disorder prediction	1	72	-	-
Adu06g00616	1275	Pfam	MutS family domain IV	826	917	IPR007861	GO:0005524\|GO:0006298\|GO:0030983
Adu06g00616	1275	MobiDBLite	consensus disorder prediction	1	51	-	-
Adu06g00616	1275	SUPERFAMILY	Tudor/PWWP/MBT	82	123	-	-
Adu06g00616	1275	Pfam	MutS domain II	455	607	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Adu06g00616	1275	Coils	Coil	904	924	-	-
Adu06g00616	1275	MobiDBLite	consensus disorder prediction	159	252	-	-
Adu06g00616	1275	Gene3D	-	968	1245	IPR027417	-
Adu06g00616	1275	Pfam	MutS domain I	339	444	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Adu06g00616	1275	SUPERFAMILY	DNA repair protein MutS, domain I	324	440	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Adu06g00616	1275	PIRSF	Msh6	1	1264	IPR017261	GO:0006298\|GO:0030983
Adu06g00616	1275	Pfam	MutS domain V	1021	1211	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Adu06g00616	1275	SMART	mutATP5	1017	1209	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Adu06g00616	1275	Pfam	MutS domain III	642	957	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Adu06g00616	1275	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	243	1226	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Adu06g00616	1275	Gene3D	-	802	933	-	-
Adu06g00616	1275	MobiDBLite	consensus disorder prediction	214	252	-	-
Adu06g00616	1275	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	979	1212	IPR027417	-
Adu06g00616	1275	MobiDBLite	consensus disorder prediction	52	66	-	-
Adu06g00616	1275	Gene3D	MutS, connector domain	453	633	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Adu06g00616	1275	Gene3D	DNA repair protein MutS, domain I	294	448	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Adu06g00616	1275	SMART	TUDOR_7	80	138	IPR002999	-
Adu06g00616	1275	SMART	DNAend	656	997	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Adu06g00616	1275	Gene3D	-	636	957	-	-
Adu06g00616	1275	SUPERFAMILY	DNA repair protein MutS, domain III	639	958	IPR036187	-
Adu06g00616	1275	SUPERFAMILY	DNA repair protein MutS, domain II	450	651	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Adu06g00616	1275	MobiDBLite	consensus disorder prediction	192	213	-	-
Adu06g00616	1275	Gene3D	-	81	131	-	-
Adu06g00616	1275	Coils	Coil	1261	1275	-	-
Adu06g00616	1275	PANTHER	DNA MISMATCH REPAIR PROTEIN MSH6	243	1226	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu06g00616	Adu-Chr6	7359892	7367048	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu06g00616	K08737		-	gmx:100811104	1867.43

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Adu06g00616	06	7359892	7367048	Adu06g00616	06	7359892	7367048	ECH