Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Adu06g00542 | ATGGCTAACCCAACACAACCTAATGTTGGGTATACCACTTCAAACCCGGATAGACAGAGTCCTACCCCTGACAAGAGTCCCATACCACCCCCTCCACCTTTTGCATCACCACCTAGATTTCCTCCCCCCATATTGCAATTGCAGCAAGATCAAGCTTCTTCCCCTTCGGTTAAACCCCCAAATTCGTCGTCCCCAGCCAATGGAGTTAAATCTGGCAGCCTTGTTCCTCACATGAGCACCCCGCCGGGGCCTCCTGTTTTTACATCGCCTGTCCGGCCGGCAGCTGTTCCTTTTCGCACATCACCTGCCTCGCCTCAGCCACTTGCTTTCTCTTCAGGATCATCTTTGCCGACTTCATCACCACCGCGATTTTCAAATGGATCGGTTGAGTTGCAACACCAAGTTTCTGATAGCATAGAGGACCATCTTCCCGCCGGGGAGTCATCCTTTGTTCTTTTCTCAGCTCATAAGGTATTGAAACAGAAGAAACAAGCTAATGTGCCCAGTCTGGGTTTTGGGGCATTGGTTTCTCCTGGGAGGGAGGTCTCAACAGGCCCTCAAGTTATTCAGCGTGATCCCCATCGATGTCAAAGCTGTGGAGCTTATGCAAATATATATTGCAACATATTGCTTGGATCAGGTCAGTGGCAGTGTGTTATATGTAGGAAATTGAATGGAAGTGATGGCGAGTACATTGGGCATAGTAAGGAAGATCTTCACAGATTTCCAGAACTATCTTCCCCGATGGTTGACTATGTTCAAACTGGGAACAAGGGACCTGGTTTTGTTCCAGTTTCAGATTCCAGAATGTCTGCCCCGGTTGTTCTTGTTATAGATGAATGCTTAGATGAACCCCACTTACAGCATCTACAAAGCTCCTTGCATGCTTTTGTTGATTCTCTCCCTCCAACAACAAGATTAGGAATTGTACTATATGGGCGTACTGTGTCAATATATGATTTTTCAGAAGAGTCAATTGCATCTGCTGACGTGCTTCCCGGGGACCAGTCACCAACCCAAGAATCTTTGAAAGGATTGATTTATGGTACTGGCATATACTTGTCAGCAATGCATGCCTCACTACCTGTAGCACATTCCATATTTTCATCATTGAGGCCCTACAAGTTAAACATACCAGAAGCTTCTAGAGATCGGTGCCTTGGAACTGCTGTTGAGGTTGCTCTTGCTATAATTCAGGGCCCATCTGCTGATCTGTCACGAGGGGTAGTTAAAAGATCAGGGGGCAATAGTAGAATTGTTGTCTGTGCCGGTGGACCAAATACTTACGGACCTGGATCAGTTCCTCATTCTTTTAATCACCCTAATTATCCATATATGGAAAAGACAGCAATAAAATGGATGGAGAATCTTGGTCGAGAGGCTCATCGACACAATACTGTTATTGATATTCTATGTGCTGGAACGTGTCCCGTAAGAGTTCCCATCTTACAACCTCTTGCTAAAGCATCAGGTGGTGTTTTGGTGCTCCATGATGATTTTGGGGAAGCCTTGGGTGTTAATTTGCAAAGGGCGTCTGCCAGGTCAGCAGGTTCTCATGGTTTGTTAGAATTGCGCACATCAGATGATATTCTCATAACTCAAGTTGTTGGCCCTGGGGAAGAATCACATGTAGACACCCATGAAACCTTTAAAAATGATACAGCCATTTATATTCAGATGCTAAGTGTTGAAGAAACGCAGAGCTTCTCTCTCTCAATGGAAACTAGGGGAGATATCAAAAGTGATTATGTATTTTTCCAGTTTGCTATTCAGTATTCAAATGTGTTTCAAGCTGATATATCCAGGGTTATCACTGTTAGACTGCCCACTGTAGATAGTATTTCAGGGTATCTTGAGAGTGTTCAAGATGAAGTTGCTGCAGTCCTAATTGCAAAAAGAAGTTTGTTACGAGCTAAAAGCCATTCAGACGCAATTGATATGCGGGCAACAATAGATGAAAGAATCAAGGATATTGCTCTAAAGTTTGGTCCTCAAGTACCCAAATCTAAACTTCACTGCTTCCCAAAGGAGCTTTCCCTTTTACCAGAGATCCTTTTCCATCTCAGGAGAGGACCACTATTGGGAAGCATTATTGGTCATGAAGATGAAAGGTCTGTGCTGAGGAACTTGTTTCTGAATGCATCCTTTGATCTGTCACTCCGAATGGTTGCTCCTCGTTGTCTAATGCACAGGGAGGGAGGAACGTTCGAGGAGTTACCAGCTTATGATCTTGCAATGCAGTCTGATGCTGCTGTTGTACTTGACCATGGCACTGATGTCTTCATTTGGTTGGGTGCTGAACTTGCAGCTGATGAAGGAAGAAGTGCTGCTGCTTTAGCAGCTTGCCGGACATTGGCTGAAGAGCTGACAGAATTCCGTTTCCCAGCGCCTCGTATACTTGCATTTAAGGAGGGTAGCTCGCAGGCTCGATATTTCGTTTCTCGCCTCATACCAGCACACAAGGATCCTCCTTATGAGCAGGAGGCAAGATTCCCGCAACTTAAGTCATTGACATCAGAACAGCGAACGAAGCTGAAAAGCAGTTTTGTTCACTTTGATGATCCTAGTTTCTGCGAATGGATGCGAAGCTTGAAAGTTGTGCCACCTGAGCCAAGCTGA | 2619 | 0.4517 | MANPTQPNVGYTTSNPDRQSPTPDKSPIPPPPPFASPPRFPPPILQLQQDQASSPSVKPPNSSSPANGVKSGSLVPHMSTPPGPPVFTSPVRPAAVPFRTSPASPQPLAFSSGSSLPTSSPPRFSNGSVELQHQVSDSIEDHLPAGESSFVLFSAHKVLKQKKQANVPSLGFGALVSPGREVSTGPQVIQRDPHRCQSCGAYANIYCNILLGSGQWQCVICRKLNGSDGEYIGHSKEDLHRFPELSSPMVDYVQTGNKGPGFVPVSDSRMSAPVVLVIDECLDEPHLQHLQSSLHAFVDSLPPTTRLGIVLYGRTVSIYDFSEESIASADVLPGDQSPTQESLKGLIYGTGIYLSAMHASLPVAHSIFSSLRPYKLNIPEASRDRCLGTAVEVALAIIQGPSADLSRGVVKRSGGNSRIVVCAGGPNTYGPGSVPHSFNHPNYPYMEKTAIKWMENLGREAHRHNTVIDILCAGTCPVRVPILQPLAKASGGVLVLHDDFGEALGVNLQRASARSAGSHGLLELRTSDDILITQVVGPGEESHVDTHETFKNDTAIYIQMLSVEETQSFSLSMETRGDIKSDYVFFQFAIQYSNVFQADISRVITVRLPTVDSISGYLESVQDEVAAVLIAKRSLLRAKSHSDAIDMRATIDERIKDIALKFGPQVPKSKLHCFPKELSLLPEILFHLRRGPLLGSIIGHEDERSVLRNLFLNASFDLSLRMVAPRCLMHREGGTFEELPAYDLAMQSDAAVVLDHGTDVFIWLGAELAADEGRSAAALAACRTLAEELTEFRFPAPRILAFKEGSSQARYFVSRLIPAHKDPPYEQEARFPQLKSLTSEQRTKLKSSFVHFDDPSFCEWMRSLKVVPPEPS | 872 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Adu06g00542 | 872 | SUPERFAMILY | Zn-finger domain of Sec23/24 | 183 | 256 | IPR036174 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Adu06g00542 | 872 | SUPERFAMILY | Helical domain of Sec23/24 | 623 | 723 | IPR036175 | GO:0006886|GO:0006888|GO:0030127 | |
| Adu06g00542 | 872 | MobiDBLite | consensus disorder prediction | 1 | 131 | - | - | |
| Adu06g00542 | 872 | MobiDBLite | consensus disorder prediction | 22 | 44 | - | - | |
| Adu06g00542 | 872 | CDD | trunk_domain | 267 | 510 | - | - | |
| Adu06g00542 | 872 | Pfam | Sec23/Sec24 beta-sandwich domain | 519 | 610 | IPR012990 | - | |
| Adu06g00542 | 872 | PANTHER | PROTEIN TRANSPORT PROTEIN SEC23 | 60 | 872 | IPR037364 | - | |
| Adu06g00542 | 872 | SUPERFAMILY | C-terminal, gelsolin-like domain of Sec23/24 | 725 | 865 | IPR036180 | - | |
| Adu06g00542 | 872 | PANTHER | PROTEIN TRANSPORT PROTEIN SEC23 | 60 | 872 | - | - | |
| Adu06g00542 | 872 | SUPERFAMILY | beta-sandwich domain of Sec23/24 | 18 | 621 | - | - | |
| Adu06g00542 | 872 | Pfam | Sec23/Sec24 zinc finger | 193 | 231 | IPR006895 | GO:0006886|GO:0006888|GO:0008270|GO:0030127 | |
| Adu06g00542 | 872 | SUPERFAMILY | vWA-like | 274 | 502 | IPR036465 | - | |
| Adu06g00542 | 872 | Pfam | Sec23/Sec24 helical domain | 624 | 720 | IPR006900 | GO:0006886|GO:0006888|GO:0030127 | |
| Adu06g00542 | 872 | Gene3D | Sec23/Sec24 helical domain | 612 | 731 | - | - | |
| Adu06g00542 | 872 | MobiDBLite | consensus disorder prediction | 104 | 131 | - | - | |
| Adu06g00542 | 872 | CDD | gelsolin_like | 725 | 816 | - | - | |
| Adu06g00542 | 872 | Pfam | Sec23/Sec24 trunk domain | 275 | 501 | IPR006896 | GO:0006886|GO:0006888|GO:0030127 | |
| Adu06g00542 | 872 | Gene3D | Severin | 739 | 835 | IPR029006 | - | |
| Adu06g00542 | 872 | MobiDBLite | consensus disorder prediction | 46 | 74 | - | - | |
| Adu06g00542 | 872 | Gene3D | von Willebrand factor, type A domain | 273 | 518 | IPR036465 | - | |
| Adu06g00542 | 872 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Adu06g00542 | 872 | Gene3D | - | 183 | 246 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Adu06g00542 | - | - | gmx:100781518 | 1560.04 |