Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00506 ATGAAACTTGGGTTTCTACTAATAAGACAGTATGTTATTAGCAGAAGAAGCAAATTTGCAGTGCAATTCCATGAATATCATCACTCAGCAGATCAGCTGAATTCCGTCATCAACAATGCTTCCCAATTCAAGAACCTCAAACACGCCACGCAAATCCACACCCAAATCATCACAGCCAACTACGCCTCCCACCCTATACTCTTCAACAACCTCCTCCTCCTGTACGCCAAATGCGGTTCCATCCACCACTCCCTCCTCTTCTTTACCTCAACCCCACGCGCCTCCATCAACGTCGTCACTTTCACCACCCTCATCACCTACCTCTCGCGTTTTAACAACCCATTCCTTGCCATCTCGTACTTCAACCGCATGAGATGCACCGGCATTTATCCCAACAATTACACATTCTCTGCCGTCTTGCCCGCTTGCGCCCACACAAACCTTGTTACCCACGGTCAACAACTGCATGCTTTGGTTTATAAACATGGATTTGACACTGATACCTTTGTGGCTAGTGCCTTGCTTGACATGTACGCTAAGTGTGGCTCTATGTCTTTGGCACAGAAGGTGTTCGATGAAATGCCCCATAGAAACCTTGTCTCTTGGAACTCTTTGATTGTTGGGTTTTTGAAAAATAACTTGTATCATCGTGCTATTGGGATTTTCAGGGAGGTTGTCCGCCAGGCCTCGCTTCCTCCTGATCAGGTTAGCTTTTCGGGTGTGTTTGCTGCTTGTGCTGCTGTGGTTGACATGGATTTCGGCAAGCAGGTGCATGGGAATGGTTTGAAGCGTGGTTTACTTGTATTGGTTTATGTGAAGAACTCGTTGGTGGACATGTACAGTAAATGCAGGTTGTTTGATGATGCGGCCAAGTTGTTCCATGCTGATGGAGAGAAAGATGTTGTTACCTGGAATGTAATGATCATGGGATGTGTACACAGTGAACACTTTGAGGAAGCTTGCAGCTATTTCAGGGCCATGAAGAGGGAAGGCTTCTTGCCAGATGAAGCTTCGTATTCCTCTGTTCTTCATGCTTGTGCTAGCATTGCTGCTTTAACTCAAGGAACCTTGATCCACAACCAGATATTAAAGCTTGGACATGTAAAAAATGCATGTGTATCGAGCTCACTGGTAATGATGTATGGCAAATGTGGGAACTTGTTTGATGCTTATCGGGTATTTGAAGAAACTGAGCATCGCAATGTGGTTTGTTGGACAGCTATGATAGCGGTTTGCCACCAACATGGCTGCGCAAATGAAGCAATTGGGTTATTTGAGGACATGCTCAAAGAGGGAATTGTGCCTGAGCACATCACTTTTGTTTCTGTGCTGTCAGCTTGCAGCCATACTGGACAGGTTGAAGATGGATTTAGGTACTTCAATTCCATGAATAACATCCATAATATAGAACCTGGGCTTGAACATTATGCTTGCATGGTTGATCTGCTTGGTCGTGTTGGGCGGTTGGATGAAGCATGGAAGTTCATTGAATCAATGCCAATCAAGCCTGACTCATCAACTTGGGGGGCTTTGCTTGGAGCATGCGGAAAGTACGGCAATCTTGAAATGGGCAGGGAGGTTGCGGACAAGCTATTCGAGTTGGAACCAGATAATCCAGGAAACTATGTGCTTCTTTCTAATATCTATTCACGACATGGGATGTTGGAAAAAGCTAATGAGGTCAGGCAATTGATGGGGATCAAGGGGGTAAGGAAAGAGATTGGATGTAGCTGGATTGATGTTAAGAACAAGACCTTTATATTCACTGTGAATGATAGGTCACATTCAAGGACCGATGAGATCTATGAAATGTTACAGAAGCTAAAGGAATTGGTAAAGAAGAGAGGATATGCTGCTGAGACACAGTTTGCAACCAACAGTGCAGAAGGGTCTGAAGAGCAGAGTTTGTGGTATCACAGTGAGAAATTAGCTCTTGCATTTGGTCTTCTGGTCCTCCCAGCTGGATCTCCTGTAAGGATAAAGAAGAATTTGAGGACTTGTGGTGATTGTCATACTGTTATGAAGTTTGCTTCGGAGATTTTTCAGAGAGAGATTATCGTAAGAGATATCAATAGGTTTCATCGATTCACTAATGGCTTGTGCTCGTGTAGAGATTATTGGTGA 2124 0.444 MKLGFLLIRQYVISRRSKFAVQFHEYHHSADQLNSVINNASQFKNLKHATQIHTQIITANYASHPILFNNLLLLYAKCGSIHHSLLFFTSTPRASINVVTFTTLITYLSRFNNPFLAISYFNRMRCTGIYPNNYTFSAVLPACAHTNLVTHGQQLHALVYKHGFDTDTFVASALLDMYAKCGSMSLAQKVFDEMPHRNLVSWNSLIVGFLKNNLYHRAIGIFREVVRQASLPPDQVSFSGVFAACAAVVDMDFGKQVHGNGLKRGLLVLVYVKNSLVDMYSKCRLFDDAAKLFHADGEKDVVTWNVMIMGCVHSEHFEEACSYFRAMKREGFLPDEASYSSVLHACASIAALTQGTLIHNQILKLGHVKNACVSSSLVMMYGKCGNLFDAYRVFEETEHRNVVCWTAMIAVCHQHGCANEAIGLFEDMLKEGIVPEHITFVSVLSACSHTGQVEDGFRYFNSMNNIHNIEPGLEHYACMVDLLGRVGRLDEAWKFIESMPIKPDSSTWGALLGACGKYGNLEMGREVADKLFELEPDNPGNYVLLSNIYSRHGMLEKANEVRQLMGIKGVRKEIGCSWIDVKNKTFIFTVNDRSHSRTDEIYEMLQKLKELVKKRGYAAETQFATNSAEGSEEQSLWYHSEKLALAFGLLVLPAGSPVRIKKNLRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGLCSCRDYW 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00506 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Adu06g00506 707 Pfam PPR repeat family 400 448 IPR002885 -
Adu06g00506 707 Pfam PPR repeat family 299 347 IPR002885 -
Adu06g00506 707 Pfam PPR repeat family 97 144 IPR002885 -
Adu06g00506 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Adu06g00506 707 PANTHER OS07G0578800 PROTEIN-RELATED 24 700 IPR045215 GO:0003723|GO:0009451
Adu06g00506 707 Pfam PPR repeat 476 499 IPR002885 -
Adu06g00506 707 Pfam PPR repeat 200 227 IPR002885 -
Adu06g00506 707 Pfam PPR repeat 172 198 IPR002885 -
Adu06g00506 707 Pfam PPR repeat 274 294 IPR002885 -
Adu06g00506 707 Pfam E motif 518 580 IPR046848 -
Adu06g00506 707 TIGRFAM PPR: pentatricopeptide repeat domain 99 132 IPR002885 -
Adu06g00506 707 TIGRFAM PPR: pentatricopeptide repeat domain 403 435 IPR002885 -
Adu06g00506 707 TIGRFAM PPR: pentatricopeptide repeat domain 302 336 IPR002885 -
Adu06g00506 707 TIGRFAM PPR: pentatricopeptide repeat domain 200 234 IPR002885 -
Adu06g00506 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Adu06g00506 707 Pfam DYW family of nucleic acid deaminases 616 707 IPR032867 GO:0008270
Adu06g00506 707 SUPERFAMILY TPR-like 377 562 IPR011990 GO:0005515
Adu06g00506 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 201 IPR002885 -
Adu06g00506 707 Gene3D Tetratricopeptide repeat domain 374 645 IPR011990 GO:0005515
Adu06g00506 707 Gene3D Tetratricopeptide repeat domain 154 258 IPR011990 GO:0005515
Adu06g00506 707 Gene3D Tetratricopeptide repeat domain 261 357 IPR011990 GO:0005515
Adu06g00506 707 Gene3D Tetratricopeptide repeat domain 14 153 IPR011990 GO:0005515
Adu06g00506 707 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 24 700 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00506 Adu-Chr6 5973317 5976271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00506 94 707 Glycoside Hydrolase AT3G49170 40.449 1.99e-163 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00506 - - ccaj:109797249 1069.68