Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00060 ATGGCGTCGTCATACCCTGGTTCCGTCAGTGCTGCCCAGGTGGGTTCCTACTTTGTTGGACAGTACTACCAAGTTCTGCGGCAACAGCCCAATCTGGTTCACCAGTTCTACTCTGATTCAAGCAGCATGGTTCGCGTTGATGGAGATTCCACCACGACTGCTTCCGATGTCCTGCAAATTCACTCTATCGTCACCTCACTTGATTTTATTACAATTGAGATCAAGACAATCAATTCTCTCGATTCTTGGGATGGAGGTGTGCTTGTAGTTGTCTCAGGTTCTGTCAAGATGAAGGATATCAGTGGGAGACGGAAGTTTGTTCAAACCTTCTTTCTTGCTCCTCAGGAGAAGGGTTACTTCGTACTGAATGATGTTTTTCATTTTGTTGATGATGGAGTAGTATACTCAAATCTGGCACCAGTGGCATCTGAAAAGATTGACACACAACATGAATCAACGTCTCTTGCAGAGCCACCAGCTCCAGATTATGATTTGGAGGAAGAAGCTAGGGAATATGTCAACTCAGTGCATATAGGTGATGATCCGGTGGACAAATATAGTCTTCCTGAGCAACAGGAACAGCAGCTACATGAAGATCTTGAAGATGAAATTGTGGTTGAAGAAACTCCTGTAGAGGAGACATCACCACCCCGTCAAAATGTTGCACATACCACCCATGAAATCCCTGTTTCTCATGTGGAGGAGTCTTTAGAGGAGCCTCCCAAGAAAACTTACGCATCTATTTTGCAAGTTGCTAGAGGGCTGTCAACTGTGCCGCAGCATACACCACAGCATTCCTTTAAAAGTGCCCCACCTCCTTCAGTATTAAACCATGTAGCACAGCCTGCTGTTCAGCAGTCAAGCTCCTCATCTACGTACGCTCCTGAGTTTGGTTCTGAGGCTAATGAGGAAGCCTATGGACTAGAAGAAGAAGGAGAAGTGACTTCTGTCTACGTGAGGAACCTGTCTCCTAATGTCACTGAATATGAGATCGACCAGGAGTTTAGAAGTTTTGGAAAAATTAAGCCAGATGGAATATTCATTAGGGTCCGAAAGGAAATTGGAGTTTGCTATGCTTTTGTGGAGTTTGAAGACATTATTGGTGTTCAAAATGCTCTTCAGGCATCTCCCATACAATTGGCTGGTAGACAAGTATACATAGAGGAGCGGAGACCAAACAGTGGCGGTGCGGCAGCAGCTCGGGGAGGAAGAAGGGGAAGAGGCAGAGGCAGTTATCAAACGGATGCTCCAAGGGGGCGTTTTGGTGGTAGGGGACCGGGCAGGGGAAATACTCAGGATGCATCAGAGTATACCAGACTAAGAGGACTTCTGTGCCTTGATAGAAAGGAGTTTTACATTTTGGGTGTGTCGTTTGTTGTGAAAGCGGTGTTTAGACCTGAGTTAGTTTGTTTTGCAAGTATAACATTAGTTACTTCCTTTTGA 1443 0.4546 MASSYPGSVSAAQVGSYFVGQYYQVLRQQPNLVHQFYSDSSSMVRVDGDSTTTASDVLQIHSIVTSLDFITIEIKTINSLDSWDGGVLVVVSGSVKMKDISGRRKFVQTFFLAPQEKGYFVLNDVFHFVDDGVVYSNLAPVASEKIDTQHESTSLAEPPAPDYDLEEEAREYVNSVHIGDDPVDKYSLPEQQEQQLHEDLEDEIVVEETPVEETSPPRQNVAHTTHEIPVSHVEESLEEPPKKTYASILQVARGLSTVPQHTPQHSFKSAPPPSVLNHVAQPAVQQSSSSSTYAPEFGSEANEEAYGLEEEGEVTSVYVRNLSPNVTEYEIDQEFRSFGKIKPDGIFIRVRKEIGVCYAFVEFEDIIGVQNALQASPIQLAGRQVYIEERRPNSGGAAAARGGRRGRGRGSYQTDAPRGRFGGRGPGRGNTQDASEYTRLRGLLCLDRKEFYILGVSFVVKAVFRPELVCFASITLVTSF 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00060 480 MobiDBLite consensus disorder prediction 392 434 - -
Adu06g00060 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 392 IPR000504 GO:0003723
Adu06g00060 480 SMART rrm1_1 316 388 IPR000504 GO:0003723
Adu06g00060 480 Gene3D - 6 133 - -
Adu06g00060 480 SUPERFAMILY RNA-binding domain, RBD 312 420 IPR035979 GO:0003676
Adu06g00060 480 SUPERFAMILY NTF2-like 10 129 IPR032710 -
Adu06g00060 480 Gene3D - 285 433 IPR012677 -
Adu06g00060 480 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Adu06g00060 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 317 380 IPR000504 GO:0003723
Adu06g00060 480 PANTHER GB|AAD20086.1 9 442 - -
Adu06g00060 480 CDD RRM_SF 317 388 - -
Adu06g00060 480 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Adu06g00060 480 CDD NTF2 10 130 IPR018222 -
Adu06g00060 480 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 9 442 IPR039539 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00060 Adu-Chr6 776231 780905 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00060 - - gmx:100787900 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g00060 06 776231 780905 Adu06g00060 06 776231 780905 ECH