Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu06g00012 ATGTATAGACCATACCTTCTCCACTTTTTGGTGGGAGTTATATCGTTGCTTACAGGGAGGGCTGGTCCAAGTGGCTTTGGATCAGCTTCAACTGCAGAGGAGGTTACTCATGGAATTGATGCCTCCAACCTCACTGCTATTATCACTGGAGGAGCAAGTGGCATTGGATTGGAGACAGCGAGAGTGCTGGCTCTGAGGAATGTACACGTCATCATTGGTGTACGGAATACAGTTAGTGCGAAGAAGGCGAAGGAAGAGATTGTTGAGCAGAAGCCGTCCGCCCGTGTTGACATTCTGAAGCTCGATTTGTGCTCTCTCACATCTGTTGCTTCTTTTGTCCACAACTTCCTTGCTCTTCATCTTCCTCTCAATATCTTAATAAACAATGCTGGAGTCATGTTCTGCCCTTTCAAGCTGTCAGAGAATGGGGTTGAAACACAGTTTCATACTAACCATCTTGGACATTTCTTGTTGACAAACTTGCTCCTCGAGAAAATGAAACAAACTGCGGAAGCCACAGGAATTGAAGGGAGGATAATAAATTTGTCATCAATTGCCCACAACTACACTTACAGAAAGGGGATTAGATTTCAAAAGCTGAATGAACGAAAAGGTTATGATAACAAGAAGGCGTACGGCCAGTCCAAGTTATGCAACATACTGCACTCAAATGAGCTTTCTCGTCGCCTACAGGAAGAGGGTGTGAACATCACTGTTAACTCGGTCCACCCAGGAATCATAATGACTCCTCTTATGAGACACTCTTCTTACCTAATGCATTTCCTAAAGATCTTCACCTTTTACATATGGAAGAACGTTCCACAGGGAGCAGCCACGACATGCTATGTTGCTCTGCACCCAAGCGTGAAAGGTGAATCTGGCAAGTACTTTGTGGATTGCAATAAGGTTAAACCAAGCAAATTTGCCTCAAATGAACAGCTTGGAAGGAAACTCTGGGATTTCAGTGAAAGACTCATCAATTCAATTTCTAAAGCTTAA 999 0.4374 MYRPYLLHFLVGVISLLTGRAGPSGFGSASTAEEVTHGIDASNLTAIITGGASGIGLETARVLALRNVHVIIGVRNTVSAKKAKEEIVEQKPSARVDILKLDLCSLTSVASFVHNFLALHLPLNILINNAGVMFCPFKLSENGVETQFHTNHLGHFLLTNLLLEKMKQTAEATGIEGRIINLSSIAHNYTYRKGIRFQKLNERKGYDNKKAYGQSKLCNILHSNELSRRLQEEGVNITVNSVHPGIIMTPLMRHSSYLMHFLKIFTFYIWKNVPQGAATTCYVALHPSVKGESGKYFVDCNKVKPSKFASNEQLGRKLWDFSERLINSISKA 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu06g00012 332 CDD retinol-DH_like_SDR_c_like 45 319 - -
Adu06g00012 332 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 12 328 - -
Adu06g00012 332 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 44 304 IPR036291 -
Adu06g00012 332 Gene3D - 36 329 - -
Adu06g00012 332 Pfam short chain dehydrogenase 45 191 IPR002347 -
Adu06g00012 332 PRINTS Glucose/ribitol dehydrogenase family signature 121 132 IPR002347 -
Adu06g00012 332 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Adu06g00012 332 PRINTS Glucose/ribitol dehydrogenase family signature 235 252 IPR002347 -
Adu06g00012 332 PRINTS Glucose/ribitol dehydrogenase family signature 45 62 IPR002347 -
Adu06g00012 332 PANTHER RETINOL DEHYDROGENASE 12 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu06g00012 Adu-Chr6 118913 126215 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu06g00012 47 305 Acyl Lipid Metabolism Gene Families AT3G55290 25.461 3.05e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu06g00012 K11153 - gmx:100781156 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g00012 06 118913 126215 Adu06g00012 06 118913 126215 ECH
Adu06g00012 06 118913 126215 Adu02g01158 02 25213151 25219486 PCT