Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01588 ATGCAGAGACATCTTCTGACACTGTTATTCTTCTTTCTTCTTCTTGACTCATCTCTTTCAATATCGCTGGGACCTGCCGCTAAAATCTTTAGGAATCCCGCCATCAAGAGATTATACAAGCATCCGCTTGCCAAAAAGGTATTCCATATCGGATTCGACTATTTGAAGAACCAGAGCACCCCTCCACCACCGTCAGGTGCGCCGGAGGAGAAAATCCAAGGCCTCCATTTGGTGAAACAGTATCTCAACGATTACGGTTACATGCAAGACTCCGACAATTACACAGATCTAATGGACCAGGACACCGTTTCTGCCATCAAAACCTATCAAACCTTCTTCAATCTCACCGTCACCGGATACCTCGATGACGAGACTCTTCAGCAGCTTTCGCTGTTCCGATGTGCTGTCCCGGACGTTAACTTCAACTACTCTCTCTCCCCTACCAACAACGTGTCGTGGCCTAACGGGAAAAACTGGTTCTCTAACCGCACCAATCTCACGTACGGCTTTCTCCCGCAGAGCGACATCCCAGACAACTTCACCGCGGTGTTTAAAGACTCATTCAAGCGGTGGTCCGACGCTATAACGCCAGTACTAAACCTAACACTCACAGAGACAAGGTACGACGATGCAGACATCAAGATAGGATTCTACAAATTTAATAACATGACGGTGGGCAATGAGGTGGTAGGGGTAAGCGTTATAGAACTTGTTTCGGGTAACGAAGATGTTACTGTTGGGGAGATGCTTTTGGATGCTACAAAGTATTGGGCACTTCCCAATGACACTCTTAAACTTAACAGCTCAACGCTAGAGGATGGTATAATTGACTTGGGTGCTGTGGCGATGCACCAGATAGGGCATCTTCTTGGACTTTCACACTCCTCTCACAATGAATCGGTTATGTATCCTTATATTTTGCCTGAAAATCAGAGGAAGGTGCAGCTCTCAAACGATGATAAACAACAAATCAAACAAGTTTATTCCAACCCTGCAAGTGGAGTTGGGACCAGTAATTGA 1020 0.4598 MQRHLLTLLFFFLLLDSSLSISLGPAAKIFRNPAIKRLYKHPLAKKVFHIGFDYLKNQSTPPPPSGAPEEKIQGLHLVKQYLNDYGYMQDSDNYTDLMDQDTVSAIKTYQTFFNLTVTGYLDDETLQQLSLFRCAVPDVNFNYSLSPTNNVSWPNGKNWFSNRTNLTYGFLPQSDIPDNFTAVFKDSFKRWSDAITPVLNLTLTETRYDDADIKIGFYKFNNMTVGNEVVGVSVIELVSGNEDVTVGEMLLDATKYWALPNDTLKLNSSTLEDGIIDLGAVAMHQIGHLLGLSHSSHNESVMYPYILPENQRKVQLSNDDKQQIKQVYSNPASGVGTSN 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01588 339 Pfam Matrixin 159 328 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Adu05g01588 339 SMART col_5 155 330 IPR006026 GO:0006508|GO:0008237|GO:0008270
Adu05g01588 339 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 154 328 - -
Adu05g01588 339 PRINTS Matrixin signature 129 142 IPR021190 GO:0004222|GO:0006508|GO:0008270
Adu05g01588 339 PRINTS Matrixin signature 184 199 IPR021190 GO:0004222|GO:0006508|GO:0008270
Adu05g01588 339 PRINTS Matrixin signature 281 306 IPR021190 GO:0004222|GO:0006508|GO:0008270
Adu05g01588 339 PRINTS Matrixin signature 316 329 IPR021190 GO:0004222|GO:0006508|GO:0008270
Adu05g01588 339 PANTHER MATRIX METALLOPROTEINASE 69 330 - -
Adu05g01588 339 Pfam Putative peptidoglycan binding domain 74 129 IPR002477 -
Adu05g01588 339 Gene3D Collagenase (Catalytic Domain) 65 333 IPR024079 GO:0008237
Adu05g01588 339 PANTHER MATRIXIN PROTEIN 69 330 - -
Adu05g01588 339 SUPERFAMILY PGBD-like 71 139 IPR036365 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01588 Adu-Chr5 28605360 28607012 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01588 - - ahf:112801038 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g01588 05 28605360 28607012 Adu05g01588 05 28605360 28607012 ECH