Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g01417 ATGAAGAGGAACAGAAGCTTCTGTCAACTATTTTTGCTCTCCTTTTTGGTGATTGTGATAACTATTATCACCTTCTCTATAATCTCAGTAGAAGCAAGGAAGAACAATCATCGCCAAAACATGATTAACAAAAGACTCCCCAAACGTCACACAAGAGGGAGAGCCACATCACCATCGCCATCTCCGTCGCCGTCTCCACCAATGTCCACCAACACTTTTGACATTATGTCCTTTGGGGCAAAGGGCAATGGAATTTCTGATGATTCACAGGCACTTGTAGTTGCATGGAGAAGTGCATGCAAAGTTGGTGGTGCTACAGTTTTAGTTCCATCTAAACTCAAATTCTTTCTCAAACCCCTCACTTTACAAGGCCCTTGTATGCCAGATCTCACTCTTCAGATTGATGGAACTCTAGTGGCTCCAGAAGAGGCATCTTCATGGCCAAAATCAAGTTTATATCAGTGGATAAATTTCAAATGGCTACAGAACTTCACACTCAAAGGATCTGGAACTCTTGATGGCCAAGGCTCTAATTGGTGGACTACTTCCTCCTCTTCAGAACCTTATAATTATGAGACCCAGAAGAGCTACTCTAAACACATTCCATACATGAAGCCAACTGCTGTGAGATTCTATTCTAGCAACCATATAACAGTTCGTGATATCAGAATCATAAACAGTCCCTTATGCCATCTAAAATTTGATAACTCAAAGGGGATTCAAGTTTCCAACATTACAATTTCTTCCCCACAGAATAGCCCTAACACTGATGGAATTCACTTGCAGAACACACACGATGTGCAAATTCAGCACTCTGATATTCAAACTGGAGATGACTGTGTATCCATCCAAACCGGTTGCTCTAAGGTTCATGTCCACCATATTATGTGTGGCCCCGGCCATGGTATAAGgggaggggagtggaattttcCTTTTTTATTGTGTTTTCTATCTGACATCATAGTTGAGGATATCTCAATGAAAAATACTCTATATGGAGCAAGGATCAAAACATGGCAGGGTGGGAATGGTATGGTTAAAAATGTGAGATTCTCAAGAATCCAAGTGTATGATGTTATGTATCCAATAATGATAGACCAATACTATTGTGACAAGCATGCGTGTAAGAACGAAACAGAAGCAGTGGTGATTTCAGGTGTTAAGTTCAAGCAAATAAGTGGGACTTATGGGGTGCAACCTATCCATCTAGCGTGCAGCAACTCCTTACCATGCACCGACGTTGACTTAATTGACATTCAACTTAGATCCTCTATTAAGTACCAAGGTTTATTACAGCAAGCTGTGTGTTGGAACTCTTATGGAACTTCTCAAGGACCTTTGCTACCTTCAAGCATTCATTATTGCTTAAGAAGTGGTGGTGGATCAATCAAGAGGATAGCAAGGTCACATGAGACTTTATGTTACTAA 1428 0.4013 MKRNRSFCQLFLLSFLVIVITIITFSIISVEARKNNHRQNMINKRLPKRHTRGRATSPSPSPSPSPPMSTNTFDIMSFGAKGNGISDDSQALVVAWRSACKVGGATVLVPSKLKFFLKPLTLQGPCMPDLTLQIDGTLVAPEEASSWPKSSLYQWINFKWLQNFTLKGSGTLDGQGSNWWTTSSSSEPYNYETQKSYSKHIPYMKPTAVRFYSSNHITVRDIRIINSPLCHLKFDNSKGIQVSNITISSPQNSPNTDGIHLQNTHDVQIQHSDIQTGDDCVSIQTGCSKVHVHHIMCGPGHGIRGGEWNFPFLLCFLSDIIVEDISMKNTLYGARIKTWQGGNGMVKNVRFSRIQVYDVMYPIMIDQYYCDKHACKNETEAVVISGVKFKQISGTYGVQPIHLACSNSLPCTDVDLIDIQLRSSIKYQGLLQQAVCWNSYGTSQGPLLPSSIHYCLRSGGGSIKRIARSHETLCY 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g01417 475 PANTHER PECTIN LYASE-LIKE SUPERFAMILY PROTEIN 21 462 - -
Adu05g01417 475 SMART pbh1 317 338 IPR006626 -
Adu05g01417 475 SMART pbh1 237 263 IPR006626 -
Adu05g01417 475 SMART pbh1 346 367 IPR006626 -
Adu05g01417 475 SMART pbh1 264 285 IPR006626 -
Adu05g01417 475 SUPERFAMILY Pectin lyase-like 62 453 IPR011050 -
Adu05g01417 475 PANTHER - 21 462 - -
Adu05g01417 475 MobiDBLite consensus disorder prediction 39 70 - -
Adu05g01417 475 Gene3D - 57 455 IPR012334 -
Adu05g01417 475 Pfam Glycosyl hydrolases family 28 105 425 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g01417 Adu-Chr5 22060586 22065049 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g01417 1 474 Glycoside Hydrolase AT3G26610 56.729 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g01417 K01213 - gmx:100803027 686.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g01417 05 22060586 22065049 Adu05g01417 05 22060586 22065049 ECH