LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu05g01083	ATGCGTCTTCCTCTGCGTCACTGCGCCACTCGCTCGCGTCTTCCGGCTGTGCTTACACTGTTCCGCCGGCCGTATCTCGGTTCTCTGTCTCCCTCTTCTCTGTGTGCGATCAAGTTGCAATGCTTTGGTTCTATTTCTGGACTTCTGCAGAGCTGCAGAAAGAACACAAAGTATTCCCCCGGCAACATTCGATTGATGAAATGCGAGAAATGCAAGGCTGTTGCAGATGAATATATAGAGTGTGAAATTATGATTCTTATGATAGATTTGATGCTTCACAAGCAAAAGGCTTATAGACATCTTCTGTACAATGTCCTCAATCAACAAACATTGAAGTTTGAGGGGCTACACTGGAAATTGGCCATTATTTATTTTATTTTCGATGCTTGTATTCATTTGTATGTAGAAGCAAGGAACTCATCTTCATTAGTCTCAACATGTTGCAAGGTGTTCATGTATGTCGTCTTTGGGAACATCATGTTTCTTCTGACTTTCTTCATTATGGTTAAGATATTTCTCAATGCATCAATCAACATCTCCAGATTCAATGACCTTTTGCTCACAATCATGATATCGTGTTACTTCAAGATTTTTCTTATTGCTATGATGGTCTGGGAATTTCCGACTTCTGTCATCTTCATCATAGAATTATTTTGTTTATCATCTAATGCCGTGGCATTGAACGTGATGACTGAATCGAGTATGAGTCGATGTGTTTGGGCCTGCTTTGGTGCATATGCTCCTCAGCGCGCCGCCGTTGATGTGACCGTTGCCGCCTGTTTCGTCCTGGTCAGTTGCCAATCCTCGTGTTTCGTCGTGCTCGAAGGCCCTTCCATTCCCCCAACGCCAGGGTCTCCAGGTCATGCTCCGCCGTCGTCCCTCTGTCGTGTGCGTCGCCAGCTCCCCGTCGTTCGTCGCCTGCTCGGCAGTGATCGTCGCCAGCTTCCCGTCGTCTGTGGCTCTCCCTCAAATCTTTGGCTACGGCGCGCCGCGGGTGGAGGCAGTGATGGCAGCGAAGCCACAACTTCTCTCGCTTCCAGATCCGAAGAACAACGGCGTTTGCATTGGAAGGAAGAATCTCTCGGCAGCCATGGCCCATGGGAGAGTTTGAGTTCGTTACAAGAACCTCTGGGTTACGATAGGGAATCGGGTTCTGGTTCGAGTGGGTTGGGTATTGGGGGTTCGGCTACCACCGGCAGGCGGCAGTCAACTGGTTTAAAGCTAATCTGTGGTCTCCCTTCCAACTCCAATTCCAATTCCAATTTCGTAGCCATGGCTGCCTCTTCCTTTACCGCTTCTACCATCCCACACCCTTACCCCTTCGCTACTACCACCAAATCTAGTCATCTTCTTCCACTTTCTTGTTCTTTCCCTCGCAATCCTACCCCACTTCCTTCCTTCCGTCTCCGAGCATCATCCACTACAGTCTCTGCCTCCGCGGTTTCCACCAAAATCGAGGATTCCAGAGTGTCCGGCACTCCGTCGAAGGCTCTGCCGTTCCGGGTGGGACACGGCTTTGACCTCCATCGGTTGGAGCCTGGTTACCCCTTAATCATCGGTGGAATCAACATCCCCCACGACAGAGGCTGCGAGGCTCATTCCGATGGGGATGTTCTGCTTCACTGTGTGGTGGATGCCATTTTAGGGGCTTTAGGTCTTCCTGATATCGGCCAGATATTCCCCGATTCTGATCCCAAATGGAAGGGCTGTGCCTCCTCTGTCTTCATCCAAGAATCTGTGAGGCTAATGCATGAGGCAGGTTATGAGATTGGGAATTTGGATGCTACATTGATTCTTCAGAGGCCTAAGCTAAGTCCACATAAGGATACCATCAAGGCCAATTTATCTGCACTGCTTGGAGTTGACCCTTCTGTGGTGAATATCAAAGCAAAAACTCATGAAAAAGTGGACAGCCTTGGAGAAAACAGAAGCATTGCTGCTCACACCGTGGTTCTTCTCATGAGGAAATAA	1971	0.4886	MRLPLRHCATRSRLPAVLTLFRRPYLGSLSPSSLCAIKLQCFGSISGLLQSCRKNTKYSPGNIRLMKCEKCKAVADEYIECEIMILMIDLMLHKQKAYRHLLYNVLNQQTLKFEGLHWKLAIIYFIFDACIHLYVEARNSSSLVSTCCKVFMYVVFGNIMFLLTFFIMVKIFLNASINISRFNDLLLTIMISCYFKIFLIAMMVWEFPTSVIFIIELFCLSSNAVALNVMTESSMSRCVWACFGAYAPQRAAVDVTVAACFVLVSCQSSCFVVLEGPSIPPTPGSPGHAPPSSLCRVRRQLPVVRRLLGSDRRQLPVVCGSPSNLWLRRAAGGGSDGSEATTSLASRSEEQRRLHWKEESLGSHGPWESLSSLQEPLGYDRESGSGSSGLGIGGSATTGRRQSTGLKLICGLPSNSNSNSNFVAMAASSFTASTIPHPYPFATTTKSSHLLPLSCSFPRNPTPLPSFRLRASSTTVSASAVSTKIEDSRVSGTPSKALPFRVGHGFDLHRLEPGYPLIIGGINIPHDRGCEAHSDGDVLLHCVVDAILGALGLPDIGQIFPDSDPKWKGCASSVFIQESVRLMHEAGYEIGNLDATLILQRPKLSPHKDTIKANLSALLGVDPSVVNIKAKTHEKVDSLGENRSIAAHTVVLLMRK	656

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu05g01083	656	Gene3D	-	497	656	IPR036571	GO:0008685\|GO:0016114
	Adu05g01083	656	CDD	MECDP_synthase	501	653	IPR003526	GO:0008685\|GO:0016114
	Adu05g01083	656	Hamap	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF].	500	655	IPR003526	GO:0008685\|GO:0016114
	Adu05g01083	656	ProSitePatterns	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature.	534	549	IPR020555	GO:0008685
	Adu05g01083	656	PANTHER	2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE	389	656	-	-
	Adu05g01083	656	TIGRFAM	ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	501	655	IPR003526	GO:0008685\|GO:0016114
	Adu05g01083	656	MobiDBLite	consensus disorder prediction	330	400	-	-
	Adu05g01083	656	MobiDBLite	consensus disorder prediction	346	362	-	-
	Adu05g01083	656	SUPERFAMILY	IpsF-like	499	655	IPR036571	GO:0008685\|GO:0016114
	Adu05g01083	656	Pfam	Arv1-like family	56	227	IPR007290	GO:0032366
	Adu05g01083	656	PANTHER	2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE, CHLOROPLASTIC	389	656	IPR003526	GO:0008685\|GO:0016114
	Adu05g01083	656	Pfam	YgbB family	500	653	IPR003526	GO:0008685\|GO:0016114

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu05g01083	Adu-Chr5	14509721	14518839	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu05g01083	K01770		-	gmx:100306378	353.214

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Adu05g01083	05	14509721	14518839	Adu05g01083	05	14509721	14518839	ECH